https://medicalxpress.com/news/2022-10-flu-rsv-viruses-fuse-hybrid.html
https://www.nature.com/articles/s41564-022-01242-5
Sunday, October 30, 2022
Friday, October 28, 2022
single phase versus triple phase power
https://www.fluke.com/en-us/learn/blog/power-quality/single-phase-vs-three-phase-power
In electricity, the phase refers to the distribution of a load. What is the difference between single-phase and three-phase power supplies? Single-phase power is a two-wire alternating current (ac) power circuit. Typically, there is one power wire—the phase wire—and one neutral wire, with current flowing between the power wire (through the load) and the neutral wire. Three-phase power is a three-wire ac power circuit with each phase ac signal 120 electrical degrees apart.
Tuesday, October 25, 2022
cpsc4180 biopython
== pre-class to do:
socrative questions (questions on contents from last lecture ): Q what do you think are the most important concepts or skills that we have discussed today?
update Canvas course materials, update learning objectives. assignments as needed:
Test-run code:
== In-class to do:
clean up destktop space, calendars,
ZOOM, live transcript (start video recording).
Socrative sign in:
+Basic biology concept and data,
Central Dogma: DNA (ATCG), RNA (AUCG), proteins (20 AA). Translation. Transcription. Replication. Genetic table.
Genes. Genomes.
Genome sequences. Expression levels.
+biopython modules
Monday, October 24, 2022
cpsc4180/5180 covid19-pandas, project discussion
== pre-class to do:
socrative questions (questions on contents from last lecture ): Q what do you think are the most important concepts or skills that we have discussed today?
update Canvas course materials, update learning objectives. assignments as needed:
Test-run code:
== In-class to do:
clean up destktop space, calendars,
ZOOM, live transcript (start video recording).
Socrative sign in:
Pandas on covid
GoogleDrive link in CoLab
final project milestones
Thursday, October 13, 2022
N3C self study notes
how to duplicate code workbook
https://unite.nih.gov/workspace/slate/documents/test-vector-duplication
Tuesday, October 11, 2022
NLM R25 program
SeattleStatSummer for Biomedical Data Science Research Training
Attracting Talented and Diverse Students to Biomedical Informatics and Data Science Careers Through Short-Term Study at OHSU
Place-based Culturally Responsive Health Informatics Research Education (PHIRE) Program
Buffalo Research Innovation in Genomic and Healthcare Technology (BRIGHT) Short-Term Training and Education
DataWiz-IN scholars program for Biomedical Informatics workforce in Indiana
Biomedical Informatics and Data Science at Institute for Informatics (BIDS@I2)
Training and Experiential Learning in Biomedical Informatics (TExBioMed)
Culturally Augmented Learning In Biomedical Informatics Research (CALIBIR) Program
OSU Summer Internship Program in Biomedical Informatics and Data Science
The Biomedical Informatics and Behavioral Sciences (BIBS) Summer Research Program
Building Accessible and Inclusive Paths for Students in Biomedical Informatics and Data Science
cpsc 4180/5180 pandas
== pre-class to do:
socrative questions (questions on contents from last lecture ): Q what do you think are the most important concept or skill that we have discussed today?
update Canvas course materials, update learning objectives. assignments as needed:
Test-run code:
== In-class to do:
clean up destktop space, calendars,
ZOOM, live transcript (start video recording).
Socrative sign in:
midterm-review (volunteer to share their videos? )
Monday, October 10, 2022
cpsc4180/5180 python lec3 numpy
== pre-class to do:
socrative questions (questions on contents from last lecture ): Q what do you think are the most important concept or skill that we have discussed today?
update Canvas course materials, update learning objectives. assignments as needed:
Test-run code:
== In-class to do:
clean up destktop space, calendars,
ZOOM, live transcript (start video recording).
Socrative sign in
PET challenge
Python lec 3. Numpy (numpy backend is C).
Go over CoLab and GoogleDrive demo
Midterm exam peer-review
How to compete (Phase 2)
- Only blue teams who participated in Phase 1 and met minimum requirements are eligible to participate in Phase 2. Eligible teams are automatically registered. If you need to make changes to your team, please contact info@drivendata.org.
- Get familiar with the problem through the problem description and code submission format pages.
- Develop and submit your centralized solution. Check out the centralized code submission format page for more details.
- Develop and submit your federated solution. Check out the federated code submission format page for more details.
Data overview
Code skeleton
https://github.com/drivendataorg/pets-prize-challenge-runtime
Wednesday, October 5, 2022
cpsc4180 20221005Wed Python lec 2, data type
== pre-class to do:
socrative questions (questions on contents from last lecture ): Q what do you think are the most important concept or skill that we have discussed today?
update Canvas course materials, update learning objectives. assignments as needed:
Test-run code:
== In-class to do:
clean up destktop space, calendars,
ZOOM, live transcript (start video recording).
Socrative sign in
Conda environment.
Python lec 2. Data types.
MPC and data privacy
MPC and data privacy
note:
threshold cryptography is often superior to block chain in many situation, because block chain are often used as a way of encryption?!
https://en.wikipedia.org/wiki/Threshold_cryptosystem
+ joshua baron, DARPA
+ kurt nielsen, partisia blockchain
+ dan boneh, Stanford, https://crypto.stanford.edu/~dabo/pubs/pubs.html
+ mariana raykova, google/columbia
zero knowledge authentication, distributed prover
Tuesday, October 4, 2022
Monday, October 3, 2022
cpsc4180 20221003 Mon
== pre-class to do:
socrative questions (questions on contents from last lecture ): Q what do you think are the most important concept or skill that we have discussed today?
update Canvas course materials, update learning objectives. assignments as needed:
Test-run code:
== In-class to do:
clean up destktop space, calendars,
ZOOM, live transcript (start video recording).
Socrative sign in
Conda environment.
Show the hidden file .RData. A student show that RStudio can disable the loading of workspace.
Python 1a. Quick start, Jupyter-notebook,
adobe image highlights incompatible with Apple Preview
adobe image highlights incompatible with Apple Preview (show as yellow area that blocked the original view).
Adobe filled box can work.
Sunday, October 2, 2022
GISAID and NCBI sars-cov-2 reference genomes
NCBI uses wuhan-hu-1
GISAID uses wuhan-hu-4.
The two sequences only differ in the polyA tails. Qin verified this using MEGA alignment.
So, wuhan-hu-1 and wuhan-hu-4 share the same gene coordinates, same GFF
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