This runntime error seems to be just a warning, because Rt was still reported.
https://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
Logging threshold set at INFO for the EpiNow2 logger
Writing EpiNow2 logs to the console and: /var/folders/bw/k6_tkc2142v1wh5r_1yhkqhc0000gp/T//Rtmpb4xcT4/regional-epinow/2020-10-27.log
Logging threshold set at INFO for the EpiNow2.epinow logger
Writing EpiNow2.epinow logs to the console and: /var/folders/bw/k6_tkc2142v1wh5r_1yhkqhc0000gp/T//Rtmpb4xcT4/epinow/2020-10-27.log
WARN [2021-11-09 19:42:32] epinow: There were 2 divergent transitions after warmup. See
http://mc-stan.org/misc/warnings.html#divergent-transitions-after-warmup
to find out why this is a problem and how to eliminate them. -
WARN [2021-11-09 19:42:32] epinow: Examine the pairs() plot to diagnose sampling problems
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