DNABERT waterfield

 

• DNABERT is installed.

  - Found repo: https://github.com/jerryji1993/DNABERT.git

  - Cloned to: DNABERT (commit b6da04e)

  - Created Conda env: dnabert (Python 3.6)

  - Installed:

      - DNABERT in editable mode (pip install -e .)

      - Example dependencies

      - pybedtools/pysam (via mamba + pip wheel fallback)

      - PyTorch stack (torch 1.10.2+cu102, torchvision 0.11.2)

  Verification passed in dnabert:

  - torch 1.10.2+cu102

  - transformers 2.5.0

  - pybedtools 0.8.1

  - pysam 0.19.0

  Use it with:

  source ~/miniforge3/etc/profile.d/conda.sh

  conda activate dnabert

  cd /home/xxx/github/DNABERT