asr whisper wahab

 test run old slurm job and it worked. 

git clone to wahahb

hqin@wahab-01 fairASR25]$ pwd/home/hqin/github/fairASR25

alphafold 3 on ODU wahab

 

• Load modules
• module load alphafold/3.0.1
• Request a high memory GPU node 
• salloc -p high-gpu-mem --gres gpu=1
• Run the software, replacing with your directories
•  crun.alphafold run_alphafold.py --output_dir=/home/tstil004/alphafold3/output --json_path=/home/tstil004/alphafold3/gmp.json --model-dir=/home/tstil004/alphafold3/models
• 
  

scGPT on wahab

To use scGPT, please follow these commands:

module load pytorch-gpu/2.1

salloc -p gpu --gres gpu:1 -c 8

crun -p ~/envs/scGPT wandb

crun.pytorch-gpu -p ~/envs/scGPT python code.py

crun on wahab

module load python3

crun python3

waha whisperx install try

 On wahab, crun only work after module load xxxx

hqin@wahab-01 ~]$ ls

[hqin@wahab-01 ~]$ module load container_env

[hqin@wahab-01 ~]$ python -m venv whisperx_env

python: Command not found.

[hqin@wahab-01 ~]$ crun python -m venv whisperx_env

hqin@wahab-01 ~]$ ls whisperx_env[hqin@wahab-01 ~]$

Did not work.