Greenfield, sample pbs job scripts

This  is an example to run a serial job on Greenfield using PBS: 

#!/bin/csh

#  Request 15 cores 

#  Note that this means the job will be allocated 750GB of memory 

#PBS -l nodes=1:ppn=15

#  Request 5 minutes of cpu time

#PBS -l walltime=30:00

#  Combine standard output and error into one file

#PBS -j oe 

set echo

cd $PBS_O_WORKDIR

module load R/3.2.1-mkl

# run my executable

R --vanilla --slave CMD BATCH ./example.R

And here is an example of “packing” several runs in one job,

so that they all run simultaneously. The output files should be all named different:

#!/bin/csh

#  Request 15 cores 

#  Note that this means the job will be allocated 750GB of memory 

#PBS -l nodes=1:ppn=15

#  Request 5 minutes of cpu time

#PBS -l walltime=30:00

#  Combine standard output and error into one file

#PBS -j oe 

set echo

cd $PBS_O_WORKDIR

# Define where /tmp files will be written

 setenv TMPDIR $PBS_O_WORKDIR

module load R/3.2.1-mkl

# run my executable

numactl -C +0 R --vanilla --slave CMD BATCH ./example0.R &

numactl -C +1 R --vanilla --slave CMD BATCH ./example1.R &

numactl -C +2 R --vanilla --slave CMD BATCH ./example2.R &

numactl -C +3 R --vanilla --slave CMD BATCH ./example3.R &

numactl -C +4 R --vanilla --slave CMD BATCH ./example4.R &

numactl -C +5 R --vanilla --slave CMD BATCH ./example5.R &

numactl -C +6 R --vanilla --slave CMD BATCH ./example6.R &

numactl -C +7 R --vanilla --slave CMD BATCH ./example7.R &

numactl -C +8 R --vanilla --slave CMD BATCH ./example8.R &

numactl -C +9 R --vanilla --slave CMD BATCH ./example9.R &

numactl -C +10 R --vanilla --slave CMD BATCH ./example10.R &

numactl -C +11 R --vanilla --slave CMD BATCH ./example11.R &

numactl -C +12 R --vanilla --slave CMD BATCH ./example12.R &

numactl -C +13 R --vanilla --slave CMD BATCH ./example13.R &

numactl -C +14 R --vanilla --slave CMD BATCH ./example14.R &

wait