Spike D614G mutation

aln2snps

msa_position

p

q

ref_position

ref_seq

type

gene

start

end

protein_id

feature_position

feature_position_mod3

triplet_start

triplet_end

ref_triplet

mut_triplet

ref_AA

mut_AA

ref_freq

mut_freq

mut_seq

3653

36626

1.98774342659889E-68

4.81792614569765E-68

23402

A

CDS

S

21563

25384

YP_009724390.1

1841

2

23401

23403

GAT

GGT

D

G

11231

30413

G

D614 to G614 change ~ Dewpoint2meter (humidity)

614x3=1842, so, position 1841 is the 2nd nucleotide position. This is consistent with mod3=2.

Code:
https://github.com/QinLab/aln2snps/blob/master/annotate_gwas_with_GFF.ipynb

Output:
https://github.com/QinLab/aln2snps/blob/master/0613/gwas-dewpoint-meta0613-positions-pq-gff-draft20200713.csv



There are other spike mutations. Are they mentioned in previous publications?