alphafold firefly test run

 

[hqin@firefly ~]$ bash /opt/ohpc/pub/singularity/test-scripts/alphafold-2/alphafold-singularity-run.sh

Mounting /scr -> /mnt/data_dir

Mounting /scr/alphafold-data/uniref90 -> /mnt/uniref90_database_path

Mounting /scr/alphafold-data/mgnify -> /mnt/mgnify_database_path

Mounting /scr/alphafold-data/bfd -> /mnt/bfd_database_path

Mounting /scr/alphafold-data/uniclust30/uniclust30_2018_08 -> /mnt/uniclust30_database_path

Mounting /scr/alphafold-data/pdb70 -> /mnt/pdb70_database_path

Mounting /scr/alphafold-data/pdb_mmcif -> /mnt/template_mmcif_dir

Mounting /scr/alphafold-data/pdb_mmcif -> /mnt/obsolete_pdbs_path

--data_dir=/mnt/data_dir/alphafold-data --uniref90_database_path=/mnt/uniref90_database_path/uniref90.fasta --mgnify_database_path=/mnt/mgnify_database_path/mgy_clusters_2018_12.fa --bfd_database_path=/mnt/bfd_database_path/bfd_metaclust_clu_complete_id30_c90_final_seq.sorted_opt --uniclust30_database_path=/mnt/uniclust30_database_path/uniclust30_2018_08 --pdb70_database_path=/mnt/pdb70_database_path/pdb70 --template_mmcif_dir=/mnt/template_mmcif_dir/mmcif_files --obsolete_pdbs_path=/mnt/obsolete_pdbs_path/obsolete.dat --output_dir=/mnt/output --benchmark=0 --logtostderr --fasta_paths=/opt/ohpc/pub/singularity/test-scripts/alphafold-2/T1050.fasta --max_template_date=2021-12-31

/scr:/mnt/data_dir,/scr/alphafold-data/uniref90:/mnt/uniref90_database_path,/scr/alphafold-data/mgnify:/mnt/mgnify_database_path,/scr/alphafold-data/bfd:/mnt/bfd_database_path,/scr/alphafold-data/uniclust30/uniclust30_2018_08:/mnt/uniclust30_database_path,/scr/alphafold-data/pdb70:/mnt/pdb70_database_path,/scr/alphafold-data/pdb_mmcif:/mnt/template_mmcif_dir,/scr/alphafold-data/pdb_mmcif:/mnt/obsolete_pdbs_path,/home/hqin:/mnt/output