Biomedical Data Science: Mining and Modeling (Spring 2025) Yale,

 

https://cbb752b25.gersteinlab.org/syllabus

Syllabus

Please see last year’s syllabus (with slide packs at the bottom) for previews for this year’s lectures, which will be slightly different. For this year, an updated slide pack will be posted after the lecture. (If it is substantially different from ‘22, an updated video will also be posted.) Video recordings for this year’s lectures can be found in the Media Library tab in Canvas.

	Topic	2025 Spring’s Lecture	2023 Spring’s Lecture	Comment	Lecture Summary
1/13	*YALE* Spring term classes begin, 8.20 a.m.
1/13	Introduction	25i1-25i2a	23i1, 23i2a
1/15	DATA - Proteomics I	25d3	23d3	Suggested Reading	25d3
1/22	DATA - Proteomics II	25d4	23d4	Suggested Reading	25d4
1/27	DATA - Genomics I	25d1	23d1		25d1
1/29	DATA - Genomics II	25d2	23d2		25d2
2/3	DATA - Knowledge Representation & Databases	25d5	23d5		25d5
2/5	MINING - Personal Genomes + Seq. Comparison	25i2b,25m3	23i2b,23m3
2/10	MINING - Seq. Comparison (con’t) + Multi-seq Alignment + Fast Alignment	25m3, 25m4, 25m5	23m3, 23m4, 23m5		2512b,25m3-part1
2/12	MINING - Variant Calling (incl. a focused section on SVs)+ Basic Multi-Omics	25m6a，23m6b, 23m7-pt1	23m6a, 23m6b,23m7
2/17	Quiz on 1st Half	quiz1 study guide
2/19	MINING - Supervised Mining #2 + Deep Learning Fundamentals #1		23m8b,23m8c
2/24	MINING - Deep Learning Fundamentals #2 + Unsupervised Mining #1		23m9a,23m9c
2/26	MINING - Unsupervised Mining #2 + Single-Cell Analysis #1		23m9d, 23m9e
3/3	MINING - Single-Cell Analysis #2 + Biomedical Image Analysis		23t1
3/5	MINING - Network Analysis		23m10a, 23m10b, 23m10c, 23m10d, 23m10e
3/7	Spring break begins
3/24	MINING - Privacy		23m11a, 23m11b
3/26	MINING/MODELING - Deep Learning Advanced I		23m12a
3/31	MINING/MODELING - Deep Learning Advanced II		23m12b
4/2	SIMULATION - Protein Simulation I		23s1
4/7	SIMULATION - Protein Simulation II		23s2
4/9	SIMULATION - Protein Simulation III		23s3
4/14	SIMULATION - Protein Simulation IV		23s4
4/16	SIMULATION - Protein Simulation V		23s5
4/21	Quiz on 2nd Half
4/23	Final Presentations
4/25	*YALE* Classes end; Reading period begins
5/1	*YALE* Final examinations begin
5/7	*YALE* Final examinations end