codex on shell scripts to build slices and separate fasta inputs.
12:11pm, no slurm job were launched after 2 hours.
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$ pwd
/home/hqin/dpgr_build_training_data
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$ bash scripts/submit_slice_jobs.sh
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_00/build_fasta_pair_and_dpgr_slice_00.sbatch
slice_00 submission response: Submitted batch job 416
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_01/build_fasta_pair_and_dpgr_slice_01.sbatch
slice_01 submission response: Submitted batch job 417
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_02/build_fasta_pair_and_dpgr_slice_02.sbatch
slice_02 submission response: Submitted batch job 418
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_03/build_fasta_pair_and_dpgr_slice_03.sbatch
slice_03 submission response: Submitted batch job 419
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_04/build_fasta_pair_and_dpgr_slice_04.sbatch
slice_04 submission response: Submitted batch job 420
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_05/build_fasta_pair_and_dpgr_slice_05.sbatch
slice_05 submission response: Submitted batch job 421
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_06/build_fasta_pair_and_dpgr_slice_06.sbatch
slice_06 submission response: Submitted batch job 422
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_07/build_fasta_pair_and_dpgr_slice_07.sbatch
slice_07 submission response: Submitted batch job 423
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_08/build_fasta_pair_and_dpgr_slice_08.sbatch
slice_08 submission response: Submitted batch job 424
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_09/build_fasta_pair_and_dpgr_slice_09.sbatch
slice_09 submission response: Submitted batch job 425
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$ squeue
JOBID PARTITION NAME USER ST TIME NODES NODELIST(REASON)
424 gpu-a100- dpgr_pai hqin CF 0:00 1 gpu-a100-2
425 gpu-a100- dpgr_pai hqin CF 0:00 1 gpu-a100-2
416 gpu-a100- dpgr_pai hqin CF 0:03 1 gpu-a100-2
417 gpu-a100- dpgr_pai hqin CF 0:03 1 gpu-a100-2
418 gpu-a100- dpgr_pai hqin CF 0:03 1 gpu-a100-2
419 gpu-a100- dpgr_pai hqin CF 0:03 1 gpu-a100-2
420 gpu-a100- dpgr_pai hqin CF 0:03 1 gpu-a100-2
421 gpu-a100- dpgr_pai hqin CF 0:03 1 gpu-a100-2
422 gpu-a100- dpgr_pai hqin CF 0:03 1 gpu-a100-2
423 gpu-a100- dpgr_pai hqin CF 0:03 1 gpu-a100-2
409 gpu-a100- fine_lr1 malam007 R 19:42:03 1 gpu-a100-1
408 gpu-a100- fine_lr5 malam007 R 1-22:19:42 1 gpu-a100-4
407 gpu-a100- fine_lr1 malam007 R 1-22:19:43 1 gpu-a100-3
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
14:11, reduce CPU request to 1 per slurm job.
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$ git pull
Warning: Permanently added 'github.com,140.82.112.3' (ECDSA) to the list of known hosts.
remote: Enumerating objects: 6, done.
remote: Counting objects: 100% (6/6), done.
remote: Compressing objects: 100% (6/6), done.
remote: Total 6 (delta 1), reused 0 (delta 0), pack-reused 0 (from 0)
Unpacking objects: 100% (6/6), 9.21 KiB | 62.00 KiB/s, done.
From github.com:QinLab/dpgr_build_training_data
dbb5117..6470cf8 main -> origin/main
* [new branch] codex/investigate-slurm-job-execution-issues -> origin/codex/investigate-slurm-job-execution-issues
Updating dbb5117..6470cf8
Fast-forward
README.md | 28 ++++++++++++++++++++++++++++
scripts/submit_slice_jobs.sh | 4 +++-
2 files changed, 31 insertions(+), 1 deletion(-)
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$ bash scripts/submit_slice_jobs.sh
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_00/build_fasta_pair_and_dpgr_slice_00.sbatch
slice_00 submission response: Submitted batch job 426
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_01/build_fasta_pair_and_dpgr_slice_01.sbatch
slice_01 submission response: Submitted batch job 427
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_02/build_fasta_pair_and_dpgr_slice_02.sbatch
slice_02 submission response: Submitted batch job 428
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_03/build_fasta_pair_and_dpgr_slice_03.sbatch
slice_03 submission response: Submitted batch job 429
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_04/build_fasta_pair_and_dpgr_slice_04.sbatch
slice_04 submission response: Submitted batch job 430
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_05/build_fasta_pair_and_dpgr_slice_05.sbatch
slice_05 submission response: Submitted batch job 431
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_06/build_fasta_pair_and_dpgr_slice_06.sbatch
slice_06 submission response: Submitted batch job 432
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_07/build_fasta_pair_and_dpgr_slice_07.sbatch
slice_07 submission response: Submitted batch job 433
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_08/build_fasta_pair_and_dpgr_slice_08.sbatch
slice_08 submission response: Submitted batch job 434
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_09/build_fasta_pair_and_dpgr_slice_09.sbatch
slice_09 submission response: Submitted batch job 435
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$ squeue
JOBID PARTITION NAME USER ST TIME NODES NODELIST(REASON)
435 gpu-a100- dpgr_pai hqin CF 1:23 1 gpu-a100-5
434 gpu-a100- dpgr_pai hqin CF 1:26 1 gpu-a100-5
426 gpu-a100- dpgr_pai hqin PD 0:00 1 (BeginTime)
427 gpu-a100- dpgr_pai hqin PD 0:00 1 (BeginTime)
428 gpu-a100- dpgr_pai hqin PD 0:00 1 (BeginTime)
429 gpu-a100- dpgr_pai hqin PD 0:00 1 (BeginTime)
430 gpu-a100- dpgr_pai hqin PD 0:00 1 (BeginTime)
431 gpu-a100- dpgr_pai hqin PD 0:00 1 (BeginTime)
432 gpu-a100- dpgr_pai hqin PD 0:00 1 (BeginTime)
433 gpu-a100- dpgr_pai hqin PD 0:00 1 (BeginTime)
409 gpu-a100- fine_lr1 malam007 R 21:47:10 1 gpu-a100-1
408 gpu-a100- fine_lr5 malam007 R 2-00:24:49 1 gpu-a100-4
407 gpu-a100- fine_lr1 malam007 R 2-00:24:50 1 gpu-a100-3
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$ squeue -t CF,PD -o '%i %P %j %u %T %M %N %R'
JOBID PARTITION NAME USER STATE TIME NODELIST NODELIST(REASON)
435 gpu-a100-8 dpgr_pair_slice_09 hqin CONFIGURING 2:05 gpu-a100-5 gpu-a100-5
434 gpu-a100-8 dpgr_pair_slice_08 hqin CONFIGURING 2:08 gpu-a100-5 gpu-a100-5
426 gpu-a100-8 dpgr_pair_slice_00 hqin PENDING 0:00 (BeginTime)
427 gpu-a100-8 dpgr_pair_slice_01 hqin PENDING 0:00 (BeginTime)
428 gpu-a100-8 dpgr_pair_slice_02 hqin PENDING 0:00 (BeginTime)
429 gpu-a100-8 dpgr_pair_slice_03 hqin PENDING 0:00 (BeginTime)
430 gpu-a100-8 dpgr_pair_slice_04 hqin PENDING 0:00 (BeginTime)
431 gpu-a100-8 dpgr_pair_slice_05 hqin PENDING 0:00 (BeginTime)
432 gpu-a100-8 dpgr_pair_slice_06 hqin PENDING 0:00 (BeginTime)
433 gpu-a100-8 dpgr_pair_slice_07 hqin PENDING 0:00 (BeginTime)
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$ squeue
JOBID PARTITION NAME USER ST TIME NODES NODELIST(REASON)
426 gpu-a100- dpgr_pai hqin CF 9:27 1 gpu-a100-8
427 gpu-a100- dpgr_pai hqin CF 9:27 1 gpu-a100-8
428 gpu-a100- dpgr_pai hqin CF 9:27 1 gpu-a100-8
429 gpu-a100- dpgr_pai hqin CF 9:27 1 gpu-a100-8
430 gpu-a100- dpgr_pai hqin CF 9:27 1 gpu-a100-8
431 gpu-a100- dpgr_pai hqin CF 9:27 1 gpu-a100-8
432 gpu-a100- dpgr_pai hqin CF 9:27 1 gpu-a100-2
433 gpu-a100- dpgr_pai hqin CF 9:27 1 gpu-a100-2
434 gpu-a100- dpgr_pai hqin CF 11:56 1 gpu-a100-8
435 gpu-a100- dpgr_pai hqin CF 11:56 1 gpu-a100-8
409 gpu-a100- fine_lr1 malam007 R 22:29:02 1 gpu-a100-1
408 gpu-a100- fine_lr5 malam007 R 2-01:06:41 1 gpu-a100-4
407 gpu-a100- fine_lr1 malam007 R 2-01:06:42 1 gpu-a100-3
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$ squeue
JOBID PARTITION NAME USER ST TIME NODES NODELIST(REASON)
426 gpu-a100- dpgr_pai hqin CF 3:51 1 gpu-a100-9
427 gpu-a100- dpgr_pai hqin CF 3:51 1 gpu-a100-9
428 gpu-a100- dpgr_pai hqin CF 3:51 1 gpu-a100-9
429 gpu-a100- dpgr_pai hqin CF 3:51 1 gpu-a100-9
430 gpu-a100- dpgr_pai hqin CF 3:51 1 gpu-a100-9
431 gpu-a100- dpgr_pai hqin CF 3:51 1 gpu-a100-9
432 gpu-a100- dpgr_pai hqin CF 3:51 1 gpu-a100-9
433 gpu-a100- dpgr_pai hqin CF 3:51 1 gpu-a100-9
434 gpu-a100- dpgr_pai hqin CF 6:21 1 gpu-a100-5
435 gpu-a100- dpgr_pai hqin CF 6:21 1 gpu-a100-5
409 gpu-a100- fine_lr1 malam007 R 22:54:56 1 gpu-a100-1
408 gpu-a100- fine_lr5 malam007 R 2-01:32:35 1 gpu-a100-4
407 gpu-a100- fine_lr1 malam007 R 2-01:32:36 1 gpu-a100-3
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$ squeue
JOBID PARTITION NAME USER ST TIME NODES NODELIST(REASON)
426 gpu-a100- dpgr_pai hqin CF 0:52 1 gpu-a100-2
427 gpu-a100- dpgr_pai hqin CF 0:52 1 gpu-a100-2
428 gpu-a100- dpgr_pai hqin CF 0:52 1 gpu-a100-2
429 gpu-a100- dpgr_pai hqin CF 0:52 1 gpu-a100-2
430 gpu-a100- dpgr_pai hqin CF 0:52 1 gpu-a100-2
431 gpu-a100- dpgr_pai hqin CF 0:52 1 gpu-a100-2
434 gpu-a100- dpgr_pai hqin CF 0:52 1 gpu-a100-11
435 gpu-a100- dpgr_pai hqin CF 0:52 1 gpu-a100-11
432 gpu-a100- dpgr_pai hqin CF 29:52 1 gpu-a100-2
433 gpu-a100- dpgr_pai hqin CF 29:52 1 gpu-a100-2
409 gpu-a100- fine_lr1 malam007 R 23:52:27 1 gpu-a100-1
408 gpu-a100- fine_lr5 malam007 R 2-02:30:06 1 gpu-a100-4
407 gpu-a100- fine_lr1 malam007 R 2-02:30:07 1 gpu-a100-3
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$ date
Mon Dec 15 21:21:42 UTC 2025
8:48pm, switch partition to A10G
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$ bash scripts/submit_slice_jobs.sh
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_00/build_fasta_pair_and_dpgr_slice_00.sbatch
slice_00 submission response: Submitted batch job 436
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_01/build_fasta_pair_and_dpgr_slice_01.sbatch
slice_01 submission response: Submitted batch job 437
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_02/build_fasta_pair_and_dpgr_slice_02.sbatch
slice_02 submission response: Submitted batch job 438
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_03/build_fasta_pair_and_dpgr_slice_03.sbatch
slice_03 submission response: Submitted batch job 439
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_04/build_fasta_pair_and_dpgr_slice_04.sbatch
slice_04 submission response: Submitted batch job 440
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_05/build_fasta_pair_and_dpgr_slice_05.sbatch
slice_05 submission response: Submitted batch job 441
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_06/build_fasta_pair_and_dpgr_slice_06.sbatch
slice_06 submission response: Submitted batch job 442
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_07/build_fasta_pair_and_dpgr_slice_07.sbatch
slice_07 submission response: Submitted batch job 443
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_08/build_fasta_pair_and_dpgr_slice_08.sbatch
slice_08 submission response: Submitted batch job 444
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_09/build_fasta_pair_and_dpgr_slice_09.sbatch
slice_09 submission response: Submitted batch job 445
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$ squeue
JOBID PARTITION NAME USER ST TIME NODES NODELIST(REASON)
436 gpu-A10G dpgr_pai hqin CF 1:05 1 gpu-A10G-1
437 gpu-A10G dpgr_pai hqin CF 1:05 1 gpu-A10G-2
438 gpu-A10G dpgr_pai hqin CF 1:05 1 gpu-A10G-3
439 gpu-A10G dpgr_pai hqin CF 1:05 1 gpu-A10G-4
440 gpu-A10G dpgr_pai hqin PD 0:00 1 (Resources)
441 gpu-A10G dpgr_pai hqin PD 0:00 1 (Priority)
442 gpu-A10G dpgr_pai hqin PD 0:00 1 (Priority)
443 gpu-A10G dpgr_pai hqin PD 0:00 1 (Priority)
444 gpu-A10G dpgr_pai hqin PD 0:00 1 (Priority)
445 gpu-A10G dpgr_pai hqin PD 0:00 1 (Priority)
426 gpu-a100- dpgr_pai hqin CF 10:59 1 gpu-a100-6
427 gpu-a100- dpgr_pai hqin CF 10:59 1 gpu-a100-6
428 gpu-a100- dpgr_pai hqin CF 10:59 1 gpu-a100-6
429 gpu-a100- dpgr_pai hqin CF 10:59 1 gpu-a100-6
430 gpu-a100- dpgr_pai hqin CF 10:59 1 gpu-a100-6
431 gpu-a100- dpgr_pai hqin CF 10:59 1 gpu-a100-6
432 gpu-a100- dpgr_pai hqin CF 10:59 1 gpu-a100-2
433 gpu-a100- dpgr_pai hqin CF 10:59 1 gpu-a100-2
434 gpu-a100- dpgr_pai hqin CF 12:59 1 gpu-a100-6
435 gpu-a100- dpgr_pai hqin CF 12:59 1 gpu-a100-6
409 gpu-a100- fine_lr1 malam007 R 1-04:20:19 1 gpu-a100-1
408 gpu-a100- fine_lr5 malam007 R 2-06:57:58 1 gpu-a100-4
407 gpu-a100- fine_lr1 malam007 R 2-06:57:59 1 gpu-a100-3
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
9:43pm. codex to fix the 'virus name' vs 'accession id' error.
ran, again, error is still there.
10pm. ID fixed the slurm setting.
10:30pm.
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$ git pull
Warning: Permanently added 'github.com,140.82.113.4' (ECDSA) to the list of known hosts.
remote: Enumerating objects: 3, done.
remote: Counting objects: 100% (3/3), done.
remote: Compressing objects: 100% (3/3), done.
remote: Total 3 (delta 0), reused 0 (delta 0), pack-reused 0 (from 0)
Unpacking objects: 100% (3/3), 2.26 KiB | 33.00 KiB/s, done.
From github.com:QinLab/dpgr_build_training_data
82601c2..d2824ac main -> origin/main
Updating 82601c2..d2824ac
Fast-forward
scripts/submit_slice_jobs.sh | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$ bash scripts/submit_slice_jobs.sh
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_00/build_fasta_pair_and_dpgr_slice_00.sbatch
slice_00 submission response: Submitted batch job 457
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_01/build_fasta_pair_and_dpgr_slice_01.sbatch
slice_01 submission response: Submitted batch job 458
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_02/build_fasta_pair_and_dpgr_slice_02.sbatch
slice_02 submission response: Submitted batch job 459
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_03/build_fasta_pair_and_dpgr_slice_03.sbatch
slice_03 submission response: Submitted batch job 460
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_04/build_fasta_pair_and_dpgr_slice_04.sbatch
slice_04 submission response: Submitted batch job 461
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_05/build_fasta_pair_and_dpgr_slice_05.sbatch
slice_05 submission response: Submitted batch job 462
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_06/build_fasta_pair_and_dpgr_slice_06.sbatch
slice_06 submission response: Submitted batch job 463
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_07/build_fasta_pair_and_dpgr_slice_07.sbatch
slice_07 submission response: Submitted batch job 464
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_08/build_fasta_pair_and_dpgr_slice_08.sbatch
slice_08 submission response: Submitted batch job 465
Submitting /home/hqin/dpgr_build_training_data/data/raw/variant_pair_slices/slice_09/build_fasta_pair_and_dpgr_slice_09.sbatch
slice_09 submission response: Submitted batch job 466
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$ squeue
JOBID PARTITION NAME USER ST TIME NODES NODELIST(REASON)
457 gpu-a100- dpgr_pai hqin CF 0:03 1 gpu-a100-2
458 gpu-a100- dpgr_pai hqin CF 0:03 1 gpu-a100-2
459 gpu-a100- dpgr_pai hqin CF 0:03 1 gpu-a100-2
460 gpu-a100- dpgr_pai hqin CF 0:03 1 gpu-a100-2
461 gpu-a100- dpgr_pai hqin CF 0:03 1 gpu-a100-2
462 gpu-a100- dpgr_pai hqin CF 0:03 1 gpu-a100-2
463 gpu-a100- dpgr_pai hqin CF 0:03 1 gpu-a100-2
464 gpu-a100- dpgr_pai hqin CF 0:03 1 gpu-a100-2
465 gpu-a100- dpgr_pai hqin CF 0:03 1 gpu-a100-5
466 gpu-a100- dpgr_pai hqin CF 0:03 1 gpu-a100-5
409 gpu-a100- fine_lr1 malam007 R 1-06:00:50 1 gpu-a100-1
408 gpu-a100- fine_lr5 malam007 R 2-08:38:29 1 gpu-a100-4
407 gpu-a100- fine_lr1 malam007 R 2-08:38:30 1 gpu-a100-3
10:39pm
(base) [hqin@ip-10-3-4-198 dpgr_build_training_data]$ git status
On branch main
Your branch is up to date with 'origin/main'.
Changes not staged for commit:
(use "git add <file>..." to update what will be committed)
(use "git restore <file>..." to discard changes in working directory)
modified: .gitignore
modified: data/raw/variant_pair_slices/slice_00/build_fasta_pair_and_dpgr_slice_00.sbatch
modified: data/raw/variant_pair_slices/slice_01/build_fasta_pair_and_dpgr_slice_01.sbatch
modified: data/raw/variant_pair_slices/slice_02/build_fasta_pair_and_dpgr_slice_02.sbatch
modified: data/raw/variant_pair_slices/slice_03/build_fasta_pair_and_dpgr_slice_03.sbatch
modified: data/raw/variant_pair_slices/slice_04/build_fasta_pair_and_dpgr_slice_04.sbatch
modified: data/raw/variant_pair_slices/slice_05/build_fasta_pair_and_dpgr_slice_05.sbatch
modified: data/raw/variant_pair_slices/slice_06/build_fasta_pair_and_dpgr_slice_06.sbatch
modified: data/raw/variant_pair_slices/slice_07/build_fasta_pair_and_dpgr_slice_07.sbatch
modified: data/raw/variant_pair_slices/slice_08/build_fasta_pair_and_dpgr_slice_08.sbatch
modified: data/raw/variant_pair_slices/slice_09/build_fasta_pair_and_dpgr_slice_09.sbatch
Untracked files:
(use "git add <file>..." to include in what will be committed)
data/raw/variant_pair_slices/slice_00/build_fasta_pair_and_dpgr_slice_00.446.out
data/raw/variant_pair_slices/slice_00/build_fasta_pair_and_dpgr_slice_00.456.out
data/raw/variant_pair_slices/slice_00/build_fasta_pair_and_dpgr_slice_00.457.out
data/raw/variant_pair_slices/slice_00/dpgr_pair_labels.tsv
data/raw/variant_pair_slices/slice_00/dpgr_pair_labels_debug.tsv
data/raw/variant_pair_slices/slice_00/dpgr_pairs_debug.tsv
data/raw/variant_pair_slices/slice_00/dpgr_pairs_part0000.jsonl
data/raw/variant_pair_slices/slice_01/build_fasta_pair_and_dpgr_slice_01.447.out
data/raw/variant_pair_slices/slice_01/build_fasta_pair_and_dpgr_slice_01.458.out
data/raw/variant_pair_slices/slice_01/dpgr_pair_labels.tsv
data/raw/variant_pair_slices/slice_01/dpgr_pairs_part0000.jsonl
data/raw/variant_pair_slices/slice_02/build_fasta_pair_and_dpgr_slice_02.448.out
data/raw/variant_pair_slices/slice_02/build_fasta_pair_and_dpgr_slice_02.459.out
data/raw/variant_pair_slices/slice_02/dpgr_pair_labels.tsv
data/raw/variant_pair_slices/slice_02/dpgr_pairs_part0000.jsonl
data/raw/variant_pair_slices/slice_03/build_fasta_pair_and_dpgr_slice_03.449.out
data/raw/variant_pair_slices/slice_03/build_fasta_pair_and_dpgr_slice_03.460.out
data/raw/variant_pair_slices/slice_03/dpgr_pair_labels.tsv
data/raw/variant_pair_slices/slice_03/dpgr_pairs_part0000.jsonl
data/raw/variant_pair_slices/slice_04/build_fasta_pair_and_dpgr_slice_04.450.out
data/raw/variant_pair_slices/slice_04/build_fasta_pair_and_dpgr_slice_04.461.out
data/raw/variant_pair_slices/slice_04/dpgr_pair_labels.tsv
data/raw/variant_pair_slices/slice_04/dpgr_pairs_part0000.jsonl
data/raw/variant_pair_slices/slice_05/build_fasta_pair_and_dpgr_slice_05.451.out
data/raw/variant_pair_slices/slice_05/build_fasta_pair_and_dpgr_slice_05.462.out
data/raw/variant_pair_slices/slice_05/dpgr_pair_labels.tsv
data/raw/variant_pair_slices/slice_05/dpgr_pairs_part0000.jsonl
data/raw/variant_pair_slices/slice_06/build_fasta_pair_and_dpgr_slice_06.452.out
data/raw/variant_pair_slices/slice_06/build_fasta_pair_and_dpgr_slice_06.463.out
data/raw/variant_pair_slices/slice_06/dpgr_pair_labels.tsv
data/raw/variant_pair_slices/slice_06/dpgr_pairs_part0000.jsonl
data/raw/variant_pair_slices/slice_07/build_fasta_pair_and_dpgr_slice_07.453.out
data/raw/variant_pair_slices/slice_07/build_fasta_pair_and_dpgr_slice_07.464.out
data/raw/variant_pair_slices/slice_07/dpgr_pair_labels.tsv
data/raw/variant_pair_slices/slice_07/dpgr_pairs_part0000.jsonl
data/raw/variant_pair_slices/slice_08/build_fasta_pair_and_dpgr_slice_08.454.out
data/raw/variant_pair_slices/slice_08/build_fasta_pair_and_dpgr_slice_08.465.out
data/raw/variant_pair_slices/slice_08/dpgr_pair_labels.tsv
data/raw/variant_pair_slices/slice_08/dpgr_pairs_part0000.jsonl
data/raw/variant_pair_slices/slice_09/build_fasta_pair_and_dpgr_slice_09.455.out
data/raw/variant_pair_slices/slice_09/build_fasta_pair_and_dpgr_slice_09.466.out
data/raw/variant_pair_slices/slice_09/dpgr_pair_labels.tsv
data/raw/variant_pair_slices/slice_09/dpgr_pairs_part0000.jsonl
no changes added to commit (use "git add" and/or "git commit -a")
by 10:48pm. All jobs are run. Json file are produced.
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