semantic segmentation (pixel wise classification)

semantic segmentation (pixel wise classification)

https://arxiv.org/abs/1511.00561

segnet :

SegNet: A Deep Convolutional Encoder-Decoder Architecture for Image Segmentation

active shape model

https://en.wikipedia.org/wiki/Active_shape_model

outfti suite

microscopy image tracker

http://www.oufti.org/

gradient kerner, image processing

Coursera course notes, image processing

Roberts filter

Sobel filter
https://en.wikipedia.org/wiki/Sobel_operator

Prewitt filter

https://en.wikipedia.org/wiki/Kernel_(image_processing)#Convolution

asymmetry ratio, mother-daughter, and image evaluation

student project, time lapsed image

MATLAB, code from image analysis

TODO: tracking objects around images

image analysis, segementation, processing references

Robert Haralick
https://scholar.google.com/citations?user=HMnF6i0AAAAJ

Robert T. Collins 
http://www.cse.psu.edu/~rtc12/publications.html

Zhongzheng Yin
http://web.mst.edu/~yinz/
http://web.mst.edu/~yinz/Projects/CellImageAnalysis/CellImageAnalysis.htm
http://web.mst.edu/~yinz/Projects/FlyTracking/


http://oufti.org/

related matlab image analysis tools
http://www.utsouthwestern.edu/labs/danuser/software/

time lapsed image analysis for RLS inference

image data: images produced by HYAA

Dang lab uses FIJI http://fiji.sc/http://fiji.sc/
In Dang lab, a person plays video of time lapsed images in IJ  at a speed of 5 frames per second.  Typically, each cell is counted twice.