hackthon challenge, biomedical

 

https://moody-challenge.physionet.org/2024/#rules

biobot data

 

https://biobot.io/data/

https://github.com/biobotanalytics/covid19-wastewater-data

auto mnemonic software for student projects

 auto mnemonic software

CPSC4900 software engineering

UTC course scheduling, time slots

Aquarium fish tank video with Yolo

https://github.com/Developer-Y/cs-video-courses#software-engineering

GitHub - CookingWithCale/MarkdownSoftwareEngineering: Software engineering markdown templates, including Requirements Analysis Document and Software Design Document.

GitHub - CookingWithCale/MarkdownSoftwareEngineering: Software engineering markdown templates, including Requirements Analysis Document and Software Design Document.

 

student coding project

 

phone: put a ring on finger

satellite image of a house -> estimate area

Redesign a known software from Android store/ Apple store, website

The Top 10 Programming Project Ideas for Beginners

• 1) Build a Multi-Page Responsive Website.
• 2) Redesign an Existing Website Template.
• 3) Design a Small JavaScript Game.
• 4) Create a Simple Application.
• 5) Random Number Generator.
• 6) Web Scraping Using Python.
• 7) Build a Working Chess Game.

PH term2 course plans

 

PH term2 course plans

Individual study: 

 AlphaFold; recent research in object segmentation and tracking; recent trends in deep learning; 

Doctoral Research: MG's project, understand the codes, data sets (training data sets), help draft and revise manuscripts. 

estimate house roof area from satellite image

estimate house roof area from satellite images

Student project,

RW

I uploaded the notebook I'm working with to my own github. I can also add it to the one you shared with me in our initial meeting.

https://github.com/rwedell/covid/blob/main/COVID-19%20Variant%20Distribution.ipynb

air quality data at EPA

 including air quality data measured daily in USA

https://www.epa.gov/outdoor-air-quality-data

potential data science projects:

 

twitter sentiment ~ election results

climate effect on a specific area, 

kaggle competitions

Artis ML intrusion detection

There are several GitHub repo with intrusion detection codes:

https://github.com/rahulvigneswaran/Intrusion-Detection-Systems

https://github.com/cstub/ml-ids 

 https://github.com/rambasnet/DeepLearning-IDS

https://github.com/vinayakumarr/Network-Intrusion-Detection

We only need to pick 2 of these methods that work for us. 

There is a Kaggle competition on intrusion detection, it provide training and testing data at

https://www.kaggle.com/c/fcupdf1920

For MS thesis, Artis may try two ML method on the Kaggle data set, compare their performance, which would good for your thesis. You can first start to try run the GitHub sample codes.

GitHub 

https://raw.githubusercontent.com/CynthiaKoopman/Network-Intrusion-Detection/master/KDDTrain%2B_2.csv

2021 REU projects:

Doman: Tweet ~ sentiment. 

Peyton: RLS modeling

REU1: covid19 transmission

REU2: mutation ~ temperature. 

REU3: Aging, network controllability

REU4: CLS --> RLS using GO network (biological implication?)

code security

 BERT algorithm 

 java vulnerabilities predictions

BERT is a natural language processing algorithm

Can start with CWE, CVE, common vulnerability database

common weakness enumeration

https://cwe.mitre.org/data/definitions/94.html 

https://github.com/toolswatch/vFeed

Ghafari HYSAA github infor

Here is the link for GT repository.( Please check readme file for more details) 

https://github.com/QinLab/HSYAA_GT

 Currently, we are working on :

1) 100 Images without increasing resolution  (60 x60 ) " 100IM_max3Cells_512x512_tiff “

https://github.com/QinLab/HSYAA_GT/tree/master/100IM_max3Cells_60x60_tiff

2) 100  Images with increasing resolution   (512 X512)   “ 100IM_max3Cells_512x512_tiff_CUBIC “ 

https://github.com/QinLab/HSYAA_GT/tree/master/100IM_max3Cells_512x512_tiff_CUBIC

REU projects

REU
mixture Gompertz, network aging fitting

RLS deep learning, prediction

advantage of temporal networks

Li, ..., Barabasi, Science, 2017,
tempoal network advantages.

Energy needed from state vector x0 to final state xf
  E(x0, xf) = 1/2 d^T x W^01_eff  x d

where Weff encode the energy structure of the network.

I did not follow S1.1 method

todo: positive and negative gin predictions

positive and negative genetic interactions predictions?

student projects

=> yeast aging gene expression clustering -->  yeast network simulation. Yeast Histone methylation -> gene expression

KR

raspeberry PI

Done: intro to R
TODO:
 writing function in R
 repeat Guven analysis using new datasets

postdoc review, wait for HR

NJ zhs352: progress

CMM website update

TODO: revise "Sign up" button to "Sign-up/Edit"

TODO for RNN:
install Keras, try on public data sets