/home/hongqin/temp_project/mactower-network-failure-simulation/1.ori.ginppi.2015Oct
[hongqin@gordon-ln3 1.ori.ginppi.2015Oct]$ cat ori_aging_loopgordon.pbs
#!/bin/bash
#PBS -l nodes=1:ppn=16
#PBS -l walltime=07:00:00:00
module load R
echo hostname
cd /oasis/scratch/hongqin/temp_project/mactower-network-failure-simulation/1.ori.ginppi.2015Oct
pwd
for p in 1.0 0.99 0.98 0.97 0.96 0.95 0.94 0.93 0.92 0.91 0.9 0.89 0.88 0.87 0.86 0.85 0.82 0.8
do
#for LOne in 0.002 0.0021 0.0022 0.0023 0.0024 0.0025 0.0026 0.0028 0.0028 0.0029 0.003 0.0035 0.004 0.0045
for LOne in 0.001 0.0011 0.0012 0.0013 0.0014 0.0015 00016 0.0017 0.0018 0.0019 0.002
do
echo "$p $LOne"
Rscript netwk_aging_sim.v0.1b.R -if1 merged_PPIGIN_Factorized2015Oct132Cols.csv -if2 essentialGeneLookupTable_20151013.csv -l1 $LOne -l2 0 -dt 4 -p $p -n 5000 -op ginppi -od ginppi.ori.out -iC 16 -d 1 -h /oasis/scratch/hongqin/temp_project/mactower-network-failure-simulation/1.ori.ginppi.2015Oct
done
done
[hongqin@gordon-ln3 1.ori.ginppi.2015Oct]$ qstat -u hongqin
gordon-fe2.local:
Req'd Req'd Elap
Job ID Username Queue Jobname SessID NDS TSK Memory Time S Time
----------------------- ----------- -------- ---------------- ------ ----- ------ ------ --------- - ---------
2394355.gordon-fe2.loc hongqin normal ori_aging_loopgo 113139 1 16 -- 168:00:00 R 00:10:54
Job started at 10:30am -->
[hongqin@gordon-ln3 1.ori.ginppi.2015Oct]$ cat ori_aging_loopgordon.2.pbs
#!/bin/bash
#PBS -l nodes=1:ppn=16
#PBS -l walltime=07:00:00:00
module load R
echo hostname
cd /oasis/scratch/hongqin/temp_project/mactower-network-failure-simulation/1.ori.ginppi.2015Oct
pwd
for p in 1.0 0.99 0.98 0.97 0.96 0.95 0.94 0.93 0.92 0.91 0.9 0.89 0.88 0.87 0.86 0.85 0.82 0.8
do
for LOne in 0.001 0.0011 0.0012 0.0013 0.0014 0.0015 00016 0.0017 0.0018 0.0019 0.002 0.0021 0.0022 0.0023 0.0024 0.0025 0.0026 0.0028 0.0028 0.0029 0.003 0.0035 0.004 0.0045
do
echo "$p $LOne"
Rscript netwk_aging_sim.v0.1b.R -if1 merged_PPIGIN_Factorized2015Oct132Cols.csv -if2 essentialGeneLookupTable_20151013.csv -l1 $LOne -l2 0 -dt 5 -p $p -n 2500 -op ginppi -od ginppi.ori.out -iC 16 -d 1 -h /oasis/scratch/hongqin/temp_project/mactower-network-failure-simulation/1.ori.ginppi.2015Oct
done
done
[hongqin@gordon-ln3 1.ori.ginppi.2015Oct]$ qstat -u hongqin
gordon-fe2.local:
Req'd Req'd Elap
Job ID Username Queue Jobname SessID NDS TSK Memory Time S Time
----------------------- ----------- -------- ---------------- ------ ----- ------ ------ --------- - ---------
2394355.gordon-fe2.loc hongqin normal ori_aging_loopgo 113139 1 16 -- 168:00:00 R 00:19:15
2394382.gordon-fe2.loc hongqin normal ori_aging_loopgo 103945 1 16 -- 168:00:00 R 00:01:09
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