Showing posts with label ts117. Show all posts

Friday, December 10, 2021

auto cajo pbs on ts117

job in EQW status? !

This does NOT worked for batch cointegration using Johansen test

-bash-4.2$

-bash-4.2$ cat cajo.pbs

#!/bin/bash -l

#$ -S /bin/bash

#$ -N epinow_job

#$ -V

#$ -cwd

. /etc/profile.d/modules.sh

module load anaconda/5.2.0

source activate r2021nov

Sunday, November 14, 2021

parse ERA5 GRIB for JHU counties on ts117, Nov 14-17, 7 days runs

The template pbs is:

-bash-4.2$ cat ts_grib_job_template.pbs

#!/bin/bash -l

#$ -S /bin/bash

#$ -N pygrib_NUMBER

#$ -cwd

. /etc/profile.d/modules.sh

module load anaconda

source activate grib

python parse_grib_4JHU-debug.py STARTINDEX ENDINDEX

-bash-4.2$

Qin used a python code to generate pbs jobs, and then submit them using shell script.

-bash-4.2$ cat generate_PBS_bash.py

import os

import re

filebatchshell = "submit_PBS.sh"

fshell = open(filebatchshell, "w")

step = 15

for i in range( 0, 600, step):

fin = open("ts_grib_job_template.pbs", "r")

LinesIn = fin.readlines()

fin.close()

LinesIn[2] = "#$ -N pygrib_" + str(i) + "\n"

LinesIn[7] = "python parse_grib_4JHU.py " + str(i) + " " + str(i + step) + " \n"

fileout = "ts_" + str(i) + ".pbs"

fout = open(fileout, "w")

for line in LinesIn:

fout.write(line)

fout.close()

buffer = "qsub " + fileout + "\n"

fshell.write(buffer)

fshell.close()

To parse the 2m-dew point, I used generate_PBS_bash_dewpoint.py

This is a 7-day run. The last t2m output is on Nov 20, and the last dewpoint file output is on Nov 21.

On Nov 21, I use github to backup running logs, and output csv files

Saturday, October 31, 2020

ts conda create condaR403

# Hong will install anaconda R403 in a conda environment on ts117. This strategy worked.

conda create --name condaR403

environment location: /home/hqin/.conda/envs/condaR403

-bash-4.2$ conda activate condaR403

conda install -c r r-base #??

# which R shows an R403 inside an conda environment.

install.packages('tidyverse') #this seems worked.

install.packages('EpiNow2') #this run for a while

non-zero exit again due to V8.

(condaR403) -bash-4.2$ conda install -c conda-forge libv8

$ conda install -c conda-forge r-randomcolor

install.packages('EpiNow2') #this worked!!!!

> library(EpiNow2)

module load sge

qsub epinow2.pbs #this runs!!!!

(condaR403) -bash-4.2$ cat epinow2.pbs

#!/bin/bash -l

#$ -S /bin/bash

#$ -N epinow_job

#$ -V

#$ -cwd

. /etc/profile.d/modules.sh

module load anaconda/5.2.0

source activate condaR403

R -f batch_Rt_by_county.R --args 900 901 1 4/1/2020 5/1/2020

Friday, October 30, 2020

ts conda tsR403, tidyverse, EpiNow2 installation

# THIS DID NOT WORK

-bash-4.2$ module load anaconda/5.2.0

-bash-4.2$ conda create --name tsR403

Collecting package metadata: done

Solving environment: done

## Package Plan ##

environment location: /home/hqin/.conda/envs/tsR403

Proceed ([y]/n)? y

Preparing transaction: done

Verifying transaction: done

Executing transaction: done

# To activate this environment, use

# $ conda activate tsR403

# To deactivate an active environment, use

# $ conda deactivate

-bash-4.2$

-bash-4.2$ conda activate tsR403

(tsR403) -bash-4.2$ conda install -c conda-forge libv8

Collecting package metadata: done

Hong then run R

install.packages('tidyverse') #this seem to worked.

-----------------------------[ ANTICONF ]-------------------------------

Configuration failed to find the libv8 engine library. Try installing:

* deb: libv8-dev or libnode-dev (Debian / Ubuntu)

* rpm: v8-devel (Fedora, EPEL)

* brew: v8 (OSX)

* csw: libv8_dev (Solaris)

To use a custom libv8, set INCLUDE_DIR and LIB_DIR manually via:

R CMD INSTALL --configure-vars='INCLUDE_DIR=... LIB_DIR=...'

---------------------------[ ERROR MESSAGE ]----------------------------

<stdin>:1:16: fatal error: v8.h: No such file or directory

compilation terminated.

-------------------------------------------------------

(tsR403) -bash-4.2$ conda install -c conda-forge r-randomcolor

Collecting package metadata: \

#this install many packages

Ref: https://github.com/iaconogi/bigSCale2/issues/19

I then tried:

R: install.packages('EpiNow2') #this seems to be running now.

library(EpiNow2) #it worked!

install.packages('woldmet')

#The entire install seem to take almost 2 hours.

Checked a few hour later, EpiNow2 installation did not work.

Wednesday, October 28, 2020

ts117 usage

module load sge

$ module load sge/2011.11p1

For local R package installation, it seems to go to

info man

-bash-4.2$ ls /cm/shared/apps/R/R-3.4.3/share/info/

I ran R/3.5.3

install.packages('tidyverse') # it went to /cm/shared/apps/R-3.5.3

Monday, June 15, 2020

git push, remote hung up unexpected, (after 1 hour, I realized I inadvertently added a 2.3 G grib file)

I tried to increase HTTP post buffer
https://confluence.atlassian.com/stashkb/git-push-fails-fatal-the-remote-end-hung-up-unexpectedly-282988530.html

git config --global http.postBuffer 157286400 #did not work. same error.

it did not work.

Workaround: tar gzip, transfer file from ts117 back to laptop through VPN. still not working.

(base) CS313BQin:parse_GRIB_JHUCSSE_COVID19 hqin$ du -sh

6.8G .

(base) CS313BQin:parse_GRIB_JHUCSSE_COVID19 hqin$ export GIT_HTTP_MAX_REQUEST_BUFFER=100M

(base) CS313BQin:parse_GRIB_JHUCSSE_COVID19 hqin$ git config --global http.postBuffer 100000000

(base) CS313BQin:parse_GRIB_JHUCSSE_COVID19 hqin$ git push

Enumerating objects: 165, done.

Counting objects: 100% (165/165), done.

Delta compression using up to 12 threads

Compressing objects: 100% (162/162), done.

Writing objects: 2% (4/163), 174.49 MiB | 10.24 MiB/s

Sunday, June 14, 2020

grib job run, ts117

20200614 Sunday 11:09pm. 86 jobs running. After maybe 5 minutes, all jobs are running.

(grib) -bash-4.2$ qstat

job-ID prior name user state submit/start at queue slots ja-task-ID

-----------------------------------------------------------------------------------------------------------------

14020 0.50500 pygrib_0 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14021 0.50500 pygrib_1 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14022 0.50500 pygrib_2 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14023 0.50500 pygrib_3 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14024 0.50500 pygrib_4 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14025 0.50500 pygrib_5 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14026 0.50500 pygrib_6 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14027 0.50500 pygrib_7 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14028 0.50500 pygrib_8 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14029 0.50500 pygrib_9 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14030 0.50500 pygrib_10 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14031 0.50500 pygrib_11 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14032 0.50500 pygrib_12 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14033 0.50500 pygrib_13 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14034 0.50500 pygrib_14 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14035 0.50500 pygrib_15 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14036 0.50500 pygrib_16 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14037 0.50500 pygrib_17 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14038 0.50500 pygrib_18 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14039 0.50500 pygrib_19 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14040 0.50500 pygrib_20 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14041 0.50500 pygrib_21 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14042 0.50500 pygrib_22 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14043 0.50500 pygrib_23 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14044 0.50500 pygrib_24 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14045 0.50500 pygrib_25 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14046 0.50500 pygrib_26 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14047 0.50500 pygrib_27 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14048 0.50500 pygrib_28 hqin r 06/14/2020 23:04:45 all.q@ts10.cm.cluster 1

14049 0.50500 pygrib_29 hqin r 06/14/2020 23:04:45 all.q@ts12.cm.cluster 1

14050 0.50500 pygrib_30 hqin r 06/14/2020 23:04:45 all.q@ts12.cm.cluster 1

14051 0.50500 pygrib_31 hqin r 06/14/2020 23:04:45 all.q@ts12.cm.cluster 1

14052 0.50500 pygrib_32 hqin r 06/14/2020 23:04:45 all.q@ts12.cm.cluster 1

14053 0.50500 pygrib_33 hqin r 06/14/2020 23:04:45 all.q@ts12.cm.cluster 1

14054 0.50500 pygrib_34 hqin r 06/14/2020 23:04:45 all.q@ts12.cm.cluster 1

14055 0.50500 pygrib_35 hqin r 06/14/2020 23:04:45 all.q@ts12.cm.cluster 1

14056 0.50500 pygrib_36 hqin r 06/14/2020 23:04:45 all.q@ts32.cm.cluster 1

14057 0.50500 pygrib_37 hqin r 06/14/2020 23:04:45 all.q@ts12.cm.cluster 1

14058 0.50500 pygrib_38 hqin r 06/14/2020 23:04:45 all.q@ts32.cm.cluster 1

14059 0.50500 pygrib_39 hqin r 06/14/2020 23:04:45 all.q@ts12.cm.cluster 1

14060 0.50500 pygrib_40 hqin r 06/14/2020 23:04:45 all.q@ts32.cm.cluster 1

14061 0.50500 pygrib_41 hqin r 06/14/2020 23:04:45 all.q@ts12.cm.cluster 1

14062 0.50500 pygrib_42 hqin r 06/14/2020 23:04:45 all.q@ts32.cm.cluster 1

14063 0.50500 pygrib_43 hqin r 06/14/2020 23:04:45 all.q@ts12.cm.cluster 1

14064 0.50500 pygrib_44 hqin r 06/14/2020 23:04:45 all.q@ts32.cm.cluster 1

14065 0.50500 pygrib_45 hqin r 06/14/2020 23:04:45 all.q@ts12.cm.cluster 1

14066 0.50500 pygrib_46 hqin r 06/14/2020 23:04:45 all.q@ts32.cm.cluster 1

14067 0.50500 pygrib_47 hqin r 06/14/2020 23:04:45 all.q@ts12.cm.cluster 1

14068 0.50500 pygrib_48 hqin r 06/14/2020 23:04:45 all.q@ts32.cm.cluster 1

14069 0.50500 pygrib_49 hqin r 06/14/2020 23:04:45 all.q@ts12.cm.cluster 1

14070 0.50500 pygrib_50 hqin r 06/14/2020 23:04:45 all.q@ts32.cm.cluster 1

14071 0.50500 pygrib_51 hqin r 06/14/2020 23:04:45 all.q@ts32.cm.cluster 1

14072 0.50500 pygrib_52 hqin r 06/14/2020 23:04:45 all.q@ts32.cm.cluster 1

14073 0.50500 pygrib_53 hqin r 06/14/2020 23:04:45 all.q@ts32.cm.cluster 1

14074 0.50500 pygrib_54 hqin r 06/14/2020 23:04:45 all.q@ts32.cm.cluster 1

14075 0.50500 pygrib_55 hqin r 06/14/2020 23:04:45 all.q@ts32.cm.cluster 1

14076 0.50500 pygrib_56 hqin r 06/14/2020 23:04:45 all.q@ts32.cm.cluster 1

14077 0.50500 pygrib_57 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14078 0.50500 pygrib_58 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14079 0.50500 pygrib_59 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14080 0.50500 pygrib_60 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14081 0.50500 pygrib_61 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14082 0.50500 pygrib_62 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14083 0.50500 pygrib_63 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14084 0.50500 pygrib_64 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14085 0.50500 pygrib_65 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14086 0.50500 pygrib_66 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14087 0.50500 pygrib_67 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14088 0.50500 pygrib_68 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14089 0.50500 pygrib_69 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14090 0.50500 pygrib_70 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14091 0.50500 pygrib_71 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14092 0.50500 pygrib_72 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14093 0.50500 pygrib_73 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14094 0.50500 pygrib_74 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14095 0.50500 pygrib_75 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14096 0.50500 pygrib_76 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14097 0.50500 pygrib_77 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14098 0.50500 pygrib_78 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14099 0.50500 pygrib_79 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14100 0.50500 pygrib_80 hqin r 06/14/2020 23:04:45 all.q@ts08.cm.cluster 1

14101 0.50500 pygrib_81 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14102 0.50500 pygrib_82 hqin r 06/14/2020 23:04:45 all.q@ts08.cm.cluster 1

14103 0.50500 pygrib_83 hqin r 06/14/2020 23:04:45 all.q@ts15.cm.cluster 1

14104 0.50500 pygrib_84 hqin r 06/14/2020 23:04:45 all.q@ts08.cm.cluster 1

14105 0.50500 pygrib_85 hqin r 06/14/2020 23:04:45 all.q@ts08.cm.cluster 1

14106 0.50500 pygrib_86 hqin r 06/14/2020 23:08:15 all.q@ts28.cm.cluster 1

14107 0.50500 pygrib_87 hqin qw 06/14/2020 23:04:44 1

14108 0.50500 pygrib_88 hqin qw 06/14/2020 23:04:44 1

14109 0.50500 pygrib_89 hqin qw 06/14/2020 23:04:44 1

14110 0.50500 pygrib_90 hqin qw 06/14/2020 23:04:44 1

14111 0.50500 pygrib_91 hqin qw 06/14/2020 23:04:44 1

14112 0.50500 pygrib_92 hqin qw 06/14/2020 23:04:44 1

14113 0.50500 pygrib_93 hqin qw 06/14/2020 23:04:44 1

14114 0.50500 pygrib_94 hqin qw 06/14/2020 23:04:44 1

14115 0.50500 pygrib_95 hqin qw 06/14/2020 23:04:44 1

14116 0.50500 pygrib_96 hqin qw 06/14/2020 23:04:44 1

14117 0.50500 pygrib_97 hqin qw 06/14/2020 23:04:44 1

14118 0.50500 pygrib_98 hqin qw 06/14/2020 23:04:44 1

14119 0.50500 pygrib_99 hqin qw 06/14/2020 23:04:44 1

14120 0.50500 pygrib_100 hqin qw 06/14/2020 23:04:44 1

14121 0.50500 pygrib_101 hqin qw 06/14/2020 23:04:44 1

14122 0.50500 pygrib_102 hqin qw 06/14/2020 23:04:44 1

14123 0.50500 pygrib_103 hqin qw 06/14/2020 23:04:44 1

14124 0.50500 pygrib_104 hqin qw 06/14/2020 23:04:44 1

14125 0.50500 pygrib_105 hqin qw 06/14/2020 23:04:44 1

14126 0.50500 pygrib_106 hqin qw 06/14/2020 23:04:44 1

14127 0.50500 pygrib_107 hqin qw 06/14/2020 23:04:44 1

14128 0.50500 pygrib_108 hqin qw 06/14/2020 23:04:44 1

14129 0.50500 pygrib_109 hqin qw 06/14/2020 23:04:44 1

14130 0.50500 pygrib_110 hqin qw 06/14/2020 23:04:44 1

14131 0.50500 pygrib_111 hqin qw 06/14/2020 23:04:44 1

14132 0.50500 pygrib_112 hqin qw 06/14/2020 23:04:44 1

14133 0.50500 pygrib_113 hqin qw 06/14/2020 23:04:44 1

14134 0.50500 pygrib_114 hqin qw 06/14/2020 23:04:44 1

14135 0.50500 pygrib_115 hqin qw 06/14/2020 23:04:44 1

14136 0.50500 pygrib_116 hqin qw 06/14/2020 23:04:44 1

14137 0.50500 pygrib_117 hqin qw 06/14/2020 23:04:44 1

14138 0.50500 pygrib_118 hqin qw 06/14/2020 23:04:44 1

14139 0.50500 pygrib_119 hqin qw 06/14/2020 23:04:44 1

14140 0.50500 pygrib_120 hqin qw 06/14/2020 23:04:44 1

14141 0.50500 pygrib_121 hqin qw 06/14/2020 23:04:44 1

14142 0.50500 pygrib_122 hqin qw 06/14/2020 23:04:44 1

14143 0.50500 pygrib_123 hqin qw 06/14/2020 23:04:44 1

14144 0.50500 pygrib_124 hqin qw 06/14/2020 23:04:44 1

14145 0.50500 pygrib_125 hqin qw 06/14/2020 23:04:44 1

14146 0.50500 pygrib_126 hqin qw 06/14/2020 23:04:44 1

14147 0.50500 pygrib_127 hqin qw 06/14/2020 23:04:44 1

14148 0.50500 pygrib_128 hqin qw 06/14/2020 23:04:44 1

14149 0.50500 pygrib_129 hqin qw 06/14/2020 23:04:44 1

14150 0.50500 pygrib_130 hqin qw 06/14/2020 23:04:44 1

14151 0.50500 pygrib_131 hqin qw 06/14/2020 23:04:44 1

14152 0.50500 pygrib_132 hqin qw 06/14/2020 23:04:44 1

14153 0.50500 pygrib_133 hqin qw 06/14/2020 23:04:44 1

14154 0.50500 pygrib_134 hqin qw 06/14/2020 23:04:44 1

14155 0.50500 pygrib_135 hqin qw 06/14/2020 23:04:44 1

14156 0.50500 pygrib_136 hqin qw 06/14/2020 23:04:44 1

14157 0.50500 pygrib_137 hqin qw 06/14/2020 23:04:45 1

14158 0.50500 pygrib_138 hqin qw 06/14/2020 23:04:45 1

14159 0.50500 pygrib_139 hqin qw 06/14/2020 23:04:45 1

14160 0.50500 pygrib_140 hqin qw 06/14/2020 23:04:45 1

14161 0.50500 pygrib_141 hqin qw 06/14/2020 23:04:45 1

14162 0.50500 pygrib_142 hqin qw 06/14/2020 23:04:45 1

14163 0.50500 pygrib_143 hqin qw 06/14/2020 23:04:45 1

14164 0.50500 pygrib_144 hqin qw 06/14/2020 23:04:45 1

14165 0.50500 pygrib_145 hqin qw 06/14/2020 23:04:45 1

14166 0.50500 pygrib_146 hqin qw 06/14/2020 23:04:45 1

14167 0.50500 pygrib_147 hqin qw 06/14/2020 23:04:45 1

14168 0.50500 pygrib_148 hqin qw 06/14/2020 23:04:45 1

14169 0.50500 pygrib_149 hqin qw 06/14/2020 23:04:45 1

14170 0.50500 pygrib_150 hqin qw 06/14/2020 23:04:45 1

14171 0.50500 pygrib_151 hqin qw 06/14/2020 23:04:45 1

14172 0.50500 pygrib_152 hqin qw 06/14/2020 23:04:45 1

14173 0.50500 pygrib_153 hqin qw 06/14/2020 23:04:45 1

14174 0.50500 pygrib_154 hqin qw 06/14/2020 23:04:45 1

14175 0.50500 pygrib_155 hqin qw 06/14/2020 23:04:45 1

grib) -bash-4.2$ qstat -f

queuename qtype resv/used/tot. load_avg arch states

---------------------------------------------------------------------------------

all.q@ts01.cm.cluster BIP 0/15/28 13.00 linux-x64 a

---------------------------------------------------------------------------------

all.q@ts02.cm.cluster BIP 0/18/28 10.00 linux-x64 a

---------------------------------------------------------------------------------

all.q@ts03.cm.cluster BIP 0/1/28 27.00 linux-x64 a

---------------------------------------------------------------------------------

all.q@ts04.cm.cluster BIP 0/28/28 0.00 linux-x64

---------------------------------------------------------------------------------

all.q@ts05.cm.cluster BIP 0/0/28 28.00 linux-x64 a

---------------------------------------------------------------------------------

all.q@ts06.cm.cluster BIP 0/28/28 0.00 linux-x64 a

---------------------------------------------------------------------------------

all.q@ts07.cm.cluster BIP 0/0/28 28.00 linux-x64 a

---------------------------------------------------------------------------------

all.q@ts08.cm.cluster BIP 0/4/28 24.00 linux-x64 a

14100 0.50500 pygrib_80 hqin r 06/14/2020 23:04:45 1

14102 0.50500 pygrib_82 hqin r 06/14/2020 23:04:45 1

14104 0.50500 pygrib_84 hqin r 06/14/2020 23:04:45 1

14105 0.50500 pygrib_85 hqin r 06/14/2020 23:04:45 1

---------------------------------------------------------------------------------

all.q@ts09.cm.cluster BIP 0/1/28 27.00 linux-x64 a

---------------------------------------------------------------------------------

all.q@ts10.cm.cluster BIP 0/28/28 0.00 linux-x64

14021 0.50500 pygrib_1 hqin r 06/14/2020 23:04:45 1

14022 0.50500 pygrib_2 hqin r 06/14/2020 23:04:45 1

14023 0.50500 pygrib_3 hqin r 06/14/2020 23:04:45 1

14024 0.50500 pygrib_4 hqin r 06/14/2020 23:04:45 1

14025 0.50500 pygrib_5 hqin r 06/14/2020 23:04:45 1

14026 0.50500 pygrib_6 hqin r 06/14/2020 23:04:45 1

14027 0.50500 pygrib_7 hqin r 06/14/2020 23:04:45 1

14028 0.50500 pygrib_8 hqin r 06/14/2020 23:04:45 1

14029 0.50500 pygrib_9 hqin r 06/14/2020 23:04:45 1

14030 0.50500 pygrib_10 hqin r 06/14/2020 23:04:45 1

14031 0.50500 pygrib_11 hqin r 06/14/2020 23:04:45 1

14032 0.50500 pygrib_12 hqin r 06/14/2020 23:04:45 1

14033 0.50500 pygrib_13 hqin r 06/14/2020 23:04:45 1

14034 0.50500 pygrib_14 hqin r 06/14/2020 23:04:45 1

14035 0.50500 pygrib_15 hqin r 06/14/2020 23:04:45 1

14036 0.50500 pygrib_16 hqin r 06/14/2020 23:04:45 1

14037 0.50500 pygrib_17 hqin r 06/14/2020 23:04:45 1

14038 0.50500 pygrib_18 hqin r 06/14/2020 23:04:45 1

14039 0.50500 pygrib_19 hqin r 06/14/2020 23:04:45 1

14040 0.50500 pygrib_20 hqin r 06/14/2020 23:04:45 1

14041 0.50500 pygrib_21 hqin r 06/14/2020 23:04:45 1

14042 0.50500 pygrib_22 hqin r 06/14/2020 23:04:45 1

14043 0.50500 pygrib_23 hqin r 06/14/2020 23:04:45 1

14044 0.50500 pygrib_24 hqin r 06/14/2020 23:04:45 1

14045 0.50500 pygrib_25 hqin r 06/14/2020 23:04:45 1

14046 0.50500 pygrib_26 hqin r 06/14/2020 23:04:45 1

14047 0.50500 pygrib_27 hqin r 06/14/2020 23:04:45 1

14048 0.50500 pygrib_28 hqin r 06/14/2020 23:04:45 1

---------------------------------------------------------------------------------

all.q@ts11.cm.cluster BIP 0/1/28 27.00 linux-x64

---------------------------------------------------------------------------------

all.q@ts12.cm.cluster BIP 0/28/28 0.00 linux-x64

14049 0.50500 pygrib_29 hqin r 06/14/2020 23:04:45 1

14050 0.50500 pygrib_30 hqin r 06/14/2020 23:04:45 1

14051 0.50500 pygrib_31 hqin r 06/14/2020 23:04:45 1

14052 0.50500 pygrib_32 hqin r 06/14/2020 23:04:45 1

14053 0.50500 pygrib_33 hqin r 06/14/2020 23:04:45 1

14054 0.50500 pygrib_34 hqin r 06/14/2020 23:04:45 1

14055 0.50500 pygrib_35 hqin r 06/14/2020 23:04:45 1

14057 0.50500 pygrib_37 hqin r 06/14/2020 23:04:45 1

14059 0.50500 pygrib_39 hqin r 06/14/2020 23:04:45 1

14061 0.50500 pygrib_41 hqin r 06/14/2020 23:04:45 1

14063 0.50500 pygrib_43 hqin r 06/14/2020 23:04:45 1

14065 0.50500 pygrib_45 hqin r 06/14/2020 23:04:45 1

14067 0.50500 pygrib_47 hqin r 06/14/2020 23:04:45 1

14069 0.50500 pygrib_49 hqin r 06/14/2020 23:04:45 1

---------------------------------------------------------------------------------

all.q@ts13.cm.cluster BIP 0/1/28 27.00 linux-x64 a

---------------------------------------------------------------------------------

all.q@ts14.cm.cluster BIP 0/1/28 27.00 linux-x64

---------------------------------------------------------------------------------

all.q@ts15.cm.cluster BIP 0/27/28 1.00 linux-x64 a

14020 0.50500 pygrib_0 hqin r 06/14/2020 23:04:45 1

14077 0.50500 pygrib_57 hqin r 06/14/2020 23:04:45 1

14078 0.50500 pygrib_58 hqin r 06/14/2020 23:04:45 1

14079 0.50500 pygrib_59 hqin r 06/14/2020 23:04:45 1

14080 0.50500 pygrib_60 hqin r 06/14/2020 23:04:45 1

14081 0.50500 pygrib_61 hqin r 06/14/2020 23:04:45 1

14082 0.50500 pygrib_62 hqin r 06/14/2020 23:04:45 1

14083 0.50500 pygrib_63 hqin r 06/14/2020 23:04:45 1

14084 0.50500 pygrib_64 hqin r 06/14/2020 23:04:45 1

14085 0.50500 pygrib_65 hqin r 06/14/2020 23:04:45 1

14086 0.50500 pygrib_66 hqin r 06/14/2020 23:04:45 1

14087 0.50500 pygrib_67 hqin r 06/14/2020 23:04:45 1

14088 0.50500 pygrib_68 hqin r 06/14/2020 23:04:45 1

14089 0.50500 pygrib_69 hqin r 06/14/2020 23:04:45 1

14090 0.50500 pygrib_70 hqin r 06/14/2020 23:04:45 1

14091 0.50500 pygrib_71 hqin r 06/14/2020 23:04:45 1

14092 0.50500 pygrib_72 hqin r 06/14/2020 23:04:45 1

14093 0.50500 pygrib_73 hqin r 06/14/2020 23:04:45 1

14094 0.50500 pygrib_74 hqin r 06/14/2020 23:04:45 1

14095 0.50500 pygrib_75 hqin r 06/14/2020 23:04:45 1

14096 0.50500 pygrib_76 hqin r 06/14/2020 23:04:45 1

14097 0.50500 pygrib_77 hqin r 06/14/2020 23:04:45 1

14098 0.50500 pygrib_78 hqin r 06/14/2020 23:04:45 1

14099 0.50500 pygrib_79 hqin r 06/14/2020 23:04:45 1

14101 0.50500 pygrib_81 hqin r 06/14/2020 23:04:45 1

14103 0.50500 pygrib_83 hqin r 06/14/2020 23:04:45 1

---------------------------------------------------------------------------------

all.q@ts16.cm.cluster BIP 0/28/28 0.00 linux-x64

14112 0.50500 pygrib_92 hqin r 06/14/2020 23:09:30 1

14114 0.50500 pygrib_94 hqin r 06/14/2020 23:09:30 1

14116 0.50500 pygrib_96 hqin r 06/14/2020 23:09:30 1

14118 0.50500 pygrib_98 hqin r 06/14/2020 23:09:30 1

14120 0.50500 pygrib_100 hqin r 06/14/2020 23:09:30 1

14122 0.50500 pygrib_102 hqin r 06/14/2020 23:09:30 1

14124 0.50500 pygrib_104 hqin r 06/14/2020 23:09:30 1

14126 0.50500 pygrib_106 hqin r 06/14/2020 23:09:30 1

14128 0.50500 pygrib_108 hqin r 06/14/2020 23:09:30 1

14130 0.50500 pygrib_110 hqin r 06/14/2020 23:09:30 1

14132 0.50500 pygrib_112 hqin r 06/14/2020 23:09:30 1

14134 0.50500 pygrib_114 hqin r 06/14/2020 23:09:30 1

14136 0.50500 pygrib_116 hqin r 06/14/2020 23:09:30 1

14138 0.50500 pygrib_118 hqin r 06/14/2020 23:09:30 1

14140 0.50500 pygrib_120 hqin r 06/14/2020 23:09:30 1

14142 0.50500 pygrib_122 hqin r 06/14/2020 23:09:30 1

14144 0.50500 pygrib_124 hqin r 06/14/2020 23:09:30 1

14146 0.50500 pygrib_126 hqin r 06/14/2020 23:09:30 1

14148 0.50500 pygrib_128 hqin r 06/14/2020 23:09:30 1

14150 0.50500 pygrib_130 hqin r 06/14/2020 23:09:30 1

14152 0.50500 pygrib_132 hqin r 06/14/2020 23:09:30 1

14154 0.50500 pygrib_134 hqin r 06/14/2020 23:09:30 1

14156 0.50500 pygrib_136 hqin r 06/14/2020 23:09:30 1

14158 0.50500 pygrib_138 hqin r 06/14/2020 23:09:30 1

14160 0.50500 pygrib_140 hqin r 06/14/2020 23:09:30 1

14162 0.50500 pygrib_142 hqin r 06/14/2020 23:09:30 1

14164 0.50500 pygrib_144 hqin r 06/14/2020 23:09:30 1

14166 0.50500 pygrib_146 hqin r 06/14/2020 23:09:30 1

---------------------------------------------------------------------------------

all.q@ts17.cm.cluster BIP 0/0/28 28.00 linux-x64 a

---------------------------------------------------------------------------------

all.q@ts18.cm.cluster BIP 0/1/28 27.00 linux-x64

---------------------------------------------------------------------------------

all.q@ts19.cm.cluster BIP 0/0/28 28.00 linux-x64 a

---------------------------------------------------------------------------------

all.q@ts20.cm.cluster BIP 0/2/28 26.00 linux-x64

---------------------------------------------------------------------------------

all.q@ts21.cm.cluster BIP 0/0/28 28.00 linux-x64 a

---------------------------------------------------------------------------------

all.q@ts22.cm.cluster BIP 0/1/28 27.00 linux-x64

---------------------------------------------------------------------------------

all.q@ts23.cm.cluster BIP 0/1/28 27.00 linux-x64 a

---------------------------------------------------------------------------------

all.q@ts24.cm.cluster BIP 0/26/28 2.00 linux-x64 a

---------------------------------------------------------------------------------

all.q@ts25.cm.cluster BIP 0/2/28 26.00 linux-x64 a

---------------------------------------------------------------------------------

all.q@ts26.cm.cluster BIP 0/1/28 27.00 linux-x64 a

---------------------------------------------------------------------------------

all.q@ts27.cm.cluster BIP 0/4/28 24.00 linux-x64

14167 0.50500 pygrib_147 hqin r 06/14/2020 23:09:45 1

14171 0.50500 pygrib_151 hqin r 06/14/2020 23:09:45 1

14174 0.50500 pygrib_154 hqin r 06/14/2020 23:10:30 1

---------------------------------------------------------------------------------

all.q@ts28.cm.cluster BIP 0/5/28 23.00 linux-x64

14106 0.50500 pygrib_86 hqin r 06/14/2020 23:08:15 1

14108 0.50500 pygrib_88 hqin r 06/14/2020 23:09:00 1

14109 0.50500 pygrib_89 hqin r 06/14/2020 23:09:00 1

14110 0.50500 pygrib_90 hqin r 06/14/2020 23:09:30 1

14172 0.50500 pygrib_152 hqin r 06/14/2020 23:09:45 1

---------------------------------------------------------------------------------

all.q@ts29.cm.cluster BIP 0/6/28 22.00 linux-x64

14107 0.50500 pygrib_87 hqin r 06/14/2020 23:09:00 1

14168 0.50500 pygrib_148 hqin r 06/14/2020 23:09:45 1

14169 0.50500 pygrib_149 hqin r 06/14/2020 23:09:45 1

14170 0.50500 pygrib_150 hqin r 06/14/2020 23:09:45 1

14173 0.50500 pygrib_153 hqin r 06/14/2020 23:10:00 1

14175 0.50500 pygrib_155 hqin r 06/14/2020 23:10:30 1

---------------------------------------------------------------------------------

all.q@ts30.cm.cluster BIP 0/28/28 0.00 linux-x64

14111 0.50500 pygrib_91 hqin r 06/14/2020 23:09:30 1

14113 0.50500 pygrib_93 hqin r 06/14/2020 23:09:30 1

14115 0.50500 pygrib_95 hqin r 06/14/2020 23:09:30 1

14117 0.50500 pygrib_97 hqin r 06/14/2020 23:09:30 1

14119 0.50500 pygrib_99 hqin r 06/14/2020 23:09:30 1

14121 0.50500 pygrib_101 hqin r 06/14/2020 23:09:30 1

14123 0.50500 pygrib_103 hqin r 06/14/2020 23:09:30 1

14125 0.50500 pygrib_105 hqin r 06/14/2020 23:09:30 1

14127 0.50500 pygrib_107 hqin r 06/14/2020 23:09:30 1

14129 0.50500 pygrib_109 hqin r 06/14/2020 23:09:30 1

14131 0.50500 pygrib_111 hqin r 06/14/2020 23:09:30 1

14133 0.50500 pygrib_113 hqin r 06/14/2020 23:09:30 1

14135 0.50500 pygrib_115 hqin r 06/14/2020 23:09:30 1

14137 0.50500 pygrib_117 hqin r 06/14/2020 23:09:30 1

14139 0.50500 pygrib_119 hqin r 06/14/2020 23:09:30 1

14141 0.50500 pygrib_121 hqin r 06/14/2020 23:09:30 1

14143 0.50500 pygrib_123 hqin r 06/14/2020 23:09:30 1

14145 0.50500 pygrib_125 hqin r 06/14/2020 23:09:30 1

14147 0.50500 pygrib_127 hqin r 06/14/2020 23:09:30 1

14149 0.50500 pygrib_129 hqin r 06/14/2020 23:09:30 1

14151 0.50500 pygrib_131 hqin r 06/14/2020 23:09:30 1

14153 0.50500 pygrib_133 hqin r 06/14/2020 23:09:30 1

14155 0.50500 pygrib_135 hqin r 06/14/2020 23:09:30 1

14157 0.50500 pygrib_137 hqin r 06/14/2020 23:09:30 1

14159 0.50500 pygrib_139 hqin r 06/14/2020 23:09:30 1

14161 0.50500 pygrib_141 hqin r 06/14/2020 23:09:30 1

14163 0.50500 pygrib_143 hqin r 06/14/2020 23:09:30 1

14165 0.50500 pygrib_145 hqin r 06/14/2020 23:09:30 1

---------------------------------------------------------------------------------

all.q@ts31.cm.cluster BIP 0/28/28 0.00 linux-x64 a

---------------------------------------------------------------------------------

all.q@ts32.cm.cluster BIP 0/28/28 0.00 linux-x64

14056 0.50500 pygrib_36 hqin r 06/14/2020 23:04:45 1

14058 0.50500 pygrib_38 hqin r 06/14/2020 23:04:45 1

14060 0.50500 pygrib_40 hqin r 06/14/2020 23:04:45 1

14062 0.50500 pygrib_42 hqin r 06/14/2020 23:04:45 1

14064 0.50500 pygrib_44 hqin r 06/14/2020 23:04:45 1

14066 0.50500 pygrib_46 hqin r 06/14/2020 23:04:45 1

14068 0.50500 pygrib_48 hqin r 06/14/2020 23:04:45 1

14070 0.50500 pygrib_50 hqin r 06/14/2020 23:04:45 1

14071 0.50500 pygrib_51 hqin r 06/14/2020 23:04:45 1

14072 0.50500 pygrib_52 hqin r 06/14/2020 23:04:45 1

14073 0.50500 pygrib_53 hqin r 06/14/2020 23:04:45 1

14074 0.50500 pygrib_54 hqin r 06/14/2020 23:04:45 1

14075 0.50500 pygrib_55 hqin r 06/14/2020 23:04:45 1

14076 0.50500 pygrib_56 hqin r 06/14/2020 23:04:45 1

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all.q@ts33.cm.cluster BIP 0/0/28 0.11 linux-x64 d

(grib) -bash-4.2$

Open Notebook

Friday, December 10, 2021

auto cajo pbs on ts117

-bash-4.2$

Sunday, November 14, 2021

parse ERA5 GRIB for JHU counties on ts117, Nov 14-17, 7 days runs

Saturday, October 31, 2020

ts conda create condaR403

Friday, October 30, 2020

ts conda tsR403, tidyverse, EpiNow2 installation

Wednesday, October 28, 2020

ts117 usage

Monday, June 15, 2020

git push problem on ts117

Sunday, June 14, 2020

grib job run, ts117