The R GetoptLong library was borrowed from PERL GetoptLong.
https://cran.r-project.org/web/packages/GetoptLong/vignettes/GetoptLong.pdf
It requires R 3.2.3. So, I updated R to 3.2.3.
#example from GetoptLong
# Rscript test-getoptlong.R --number 4 --verbose T
# Rscript test-getoptlong.R -n 4 --verbose T
library(GetoptLong)
cutoff = 0.05
GetoptLong(c(
"number|n=i", "Number of items, integer, mandatory option",
"cutoff|c=f", "cutoff to filter results, optional, default (0.05)",
"verbose|v", "print messages"
))
print(c("input:", 'number'=number, 'cutoff'=cutoff, 'verbose'=verbose))
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