ucsc genome browsers
https://users.soe.ucsc.edu/~kuhn/workshops/spelman2015/
variant annotation integrator
assembly data hubs
100way multiple alignment on human
virtual machine (a local ucsc browser, GBIB genome browser in a box. A standalone version, and can be downloaded.)
youtube training channel
MySQL in the backend
Sequence files are stored separately.
plant hub using ‘track data hubs’ (upload tracks for references genomes in UCSC).
xeno RNA
http://en.wikipedia.org/wiki/Xeno_nucleic_acid
“My Data”, -> “Session” for shared project views.
GenomeWiki
BED4 format for tracks
https://genome.ucsc.edu/FAQ/FAQformat.html
**Download sessions locally. Session will expire after 3-4 months.
