Thursday, May 28, 2015

Notes on USCS genome broswer

ucsc genome browsers

variant annotation integrator
assembly data hubs
100way multiple alignment on human
virtual machine (a local ucsc browser, GBIB genome browser in a box. A standalone version, and can be downloaded.)
youtube training channel

MySQL in the backend
Sequence files are stored separately.

plant hub using ‘track data hubs’  (upload tracks for references genomes in UCSC).

xeno RNA

“My Data”, -> “Session”  for shared project views.


BED4 format for tracks

**Download sessions locally. Session will expire after 3-4 months.