Open Notebook: February 2021

Saturday, February 27, 2021

zoom fatigue

https://www.cnet.com/health/stanford-zoom-fatigue-is-real-and-now-we-know-what-causes-it/

REU mentor mentee tips

https://sites.lsa.umich.edu/reuchem/wp-content/uploads/sites/648/2019/07/Geisinger2015.pdf

• Safe—effective mentors teach students about laboratory procedures and safety protocol. • Prepared—effective mentors are ready for their REU students—they have the necessary supplies and equipment and have ideas or a plan for the student’s research project. • Proactive—effective mentors monitor the student’s progress and make meaningful changes when problems arise. • Patient—effective mentors are patient and understanding with students. • Present—effective mentors are readily available for students to approach, seek advice, and ask questions. • Positive—effective mentors maintain a positive attitude in the laboratory and giving the student positive feedback on his or her work.

https://reu.eecs.wsu.edu/docs/REU-Mentor-Guidelines.pdf

Friday, February 26, 2021

CAE KU and other public document and inforamtion

https://www.iad.gov/NIETP/documents/Requirements/CAE-CD_Program_Guidance_2020.pdf

https://www.iad.gov/nietp/caerequirements.cfm

https://www.ncyte.net/cae-program

Thursday, February 25, 2021

cpsc2100 midterm review,

multiple choice section: key concepts and learning objectives

* tuple; list; dictionary;

* scope

* mutable

* codes and runtime errors

* AGILE

* Git usage

coding section: 5 Questions.

Computer Science Education

https://www.csc.ncsu.edu/people/lester

https://www.tandfonline.com/toc/ncse20/current

DrugOrchestra: Jointly predicting drug response, targets, and side effects via deep multi-task learning

Yuepeng Jiang1 , Stefano Rensi2 , Sheng Wang 2*, Russ B. Altman 2,3* 1Department of Electrical and Computer Engineering, University of California, San Diego, USA 2Department of Bioengineering, Stanford University, Stanford, CA, USA 3Department of Genetics, Stanford University, Stanford, CA, USA *Correspondence to swang91@stanford.edu russ.altman@stanford.edu

multi-task deep learning

Training multiple tasks simultaneously could be challenging using multi-task learning since they need

to be assigned proper importance weights. Extensively tuning hyperparameters for the weights of

each task is time consuming. Therefore, we used a schema that can automatically adjust the weight of

each task. In this paper, we compared two weight adjusting strategies introduced by Liu et al. [23] and

Liu et al. [48] and observed that the dynamic weight adjustment strategy from Liu et al. [23] is

empirically better. The dynamic weight adjustment (DWA) strategy first calculates the relative

descending rate ω from two previous epochs.

https://www.biorxiv.org/content/10.1101/2020.11.17.385757v1.full.pdf

https://github.com/jiangdada1221/DrugOrchestra

single gene co-expression, scLink

using mixture Gamma + Normal to model single gene expression: Gamma is the noise and Normal is the signal!!

co-expression network were constrcuted using Gaussian method.

Reference:

https://www.biorxiv.org/content/10.1101/2020.09.19.304956v1.full.pdf

2021 ReCOMB papers

https://www.recomb2021.org/accepted-papers

deep fusion;

deep fusion, for heterogenous sensory data, 2019

different input X_i --> CNN_i --> Sensory output S_i

Different S_i are then averaged cross-sensory or combined through weight method,

Wednesday, February 24, 2021

national cybersecurity training and education center

https://ncytecenter.wildapricot.org/

Similarity network fusion for aggregating data types on a genomic scale

I found that this is not a machine learning method. It seems to be a graph branch heuristics.

https://www.nature.com/articles/nmeth.2810.pdf?origin=ppub

Machine Learning and Integrative Analysis of Biomedical Big Data, MDPI 2019

Machine Learning and Integrative Analysis of Biomedical Big Data, MDPI
Genes, 2019, 10, 87

"Specifically, we discuss state-of-the-art ML approaches that can address five important challenges in multi-omics integrative analysis: the curse of dimensionality, data heterogeneity, missing data, class imbalance, and scalability issues."

Tuesday, February 23, 2021

single cell RNAseq GEO data set, partial

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE115978

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE109881

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE114961

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE107451

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE95021

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE41860

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE111136

The effect of caloric restriction on the transcriptome of dermal fibroblasts during aging

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110982

The effect of caloric restriction on the transcriptome of dermal fibroblasts during aging

Series GSE110982

Query DataSets for GSE110982

Status

Public on Nov 14, 2018

Title

The effect of caloric restriction on the transcriptome of dermal fibroblasts during aging

Organism

Mus musculus

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE110982

scRNAseq of aging dermal fibroblasts

Mus musculus

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE111136

Aging alters the epigenetic asymmetry of HSC division [scRNA-Seq]

Aging alters the epigenetic asymmetry of HSC division [scRNA-Seq]
Organism	Mus musculus

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE116708

Aging retains neural stem cells in a dormant state, mouse aging

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE115626

Notch signalling mediates secondary senescence

Notch signalling mediates secondary senescence
Organisms	Homo sapiens; Mus musculus

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE115301

Aging Human Hematopoietic Stem Cells Manifest Profound Epigenetic Reprogramming of Enhancers That May Predispose to Leukemia (ChIP-seq)

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE104404

*** Ageing affects DNA methylation and transcriptional cell-to-cell variability in muscle stem cells [scRNA-seq]

Ageing affects DNA methylation and transcriptional cell-to-cell variability in muscle stem cells [scRNA-seq]

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE121364

5 young and 3 old mice.

Hernando-Herraez I, Evano B, Stubbs T, Commere PH et al. Ageing affects DNA methylation drift and transcriptional cell-to-cell variability in mouse muscle stem cells. Nat Commun 2019 Sep 25;10(1):4361. PMID: 31554804

Supplementary file	Size	Download	File type/resource
GSE121364_Table_raw_counts_RNA_QSC.txt.gz	2.0 Mb	(ftp)(http)	TXT
SRA Run Selector https://pubmed.ncbi.nlm.nih.gov/31554804/ This dataset provided a matrix, rows start with gene names eneName chr start lane3_Tom_Y4_TA_Hi_11_CTATCATG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam lane3_Tom_Y4_TA_Hi_12_TCTCAGTG_L003_22540_7$ Xkr4 1 3205901 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 $ Gm1992 1 3466587 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 $ Rp1 1 4343507 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0$ Sox17 1 4490928 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0$ Mrpl15 1 4773206 0 0 121 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 109 0 140 0 0 0 0 0 0 0 86 0 0 0 0 190 0 0 0 49 0 0 0 0 109 0 0 4 0 1 $ Lypla1 1 4807788 0 0 0 0 407 0 1 136 0 0 0 0 4 0 0 0 0 0 0 6 0 0 0 60 0 0 0 0 0 0 138 0 0 1 319 0 0 0 0 0 0 146 0 6 1 0 3 0 0 0 9 0 0$ Tcea1 1 4857814 69 0 0 0 290 3 5 0 0 0 0 0 18 0 0 6 86 0 0 237 0 72 0 0 0 0 0 0 0 0 73 0 0 3 2 0 0 120 0 0 0 6 0 20 147 0 126 0 0 6 2$ Gm6104 1 4879202 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 0 0 0 0 0 0 0 0 0 0 0 18 0 0 0 9 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 0 0 0 0 0 0 $ Rgs20 1 4

The columns of these data sets are:

lanlane3_Tom_Y4_TA_Hi_11_CTATCATG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_12_TCTCAGTG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_13_GCCTGCCC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_1_TTCCTGCT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_23_CGCCTGAT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_25_TTCCATTG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_27_CTAGATAG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_28_CCCATAGG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_29_CGAGATCC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_30_GTATAGGG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_31_TAAGGGTG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_34_GAGCCAAT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_35_CCGACAAG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_36_GCTGTGAA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_37_GCGCTGAT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_38_AGTCCGAT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_39_CCGTTAGG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_43_CATAGGTC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_44_ACAAAGCC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_45_GAGGGCAG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_47_CCTACCCG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_48_CATTTTGC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_49_TCTCACGG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_4_AATGAATT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_50_GTTGTCGG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_51_CGCTAAGC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_52_GCTGGACA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_53_GAGATGCC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_54_GTGTCTGA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_55_TATACATC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_56_AGCAACGA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_57_TAAGTTCG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_58_GATAGAGG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_59_CAGCTGAC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_61_GCATCCGG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_63_GAAGCGCA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_64_CGACCCTT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_68_TGCTCTAG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_69_GAGGTCGC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_71_GATTGCGT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_72_GAGCGCAT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_74_GCCTGTTC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_75_CGTTACTA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_77_TTTTACGT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_79_ATCGTCCT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_7_GGGTCCAT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_80_CCGATGTA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_81_TCAGATTC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_82_GCTAACTC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_83_CTCTCTCA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_84_ACTCTTTC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_85_AGTGTAGT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_87_CGCACCTA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_88_CAAGGAGC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_90_GTCTTGGC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_91_CCTGAGCA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_92_TAAACATA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_93_AAATACTC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_94_ATGCGTCG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y4_TA_Hi_95_CGAATCGA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_10_TCGTTAGC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_12_AGGCAGCT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_13_TGTCATCT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_17_GCCAATGT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_19_GGCACAAC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_1_CGATGTTT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_20_AACGTGTG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_21_AGTCCAAC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_26_TTGCGTAC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_27_GTGCAGTA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_29_TCTGACGC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_2_TATGTGGC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_33_TAGCTTGT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_34_TGACAGAC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_36_ATCAACCG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_37_GTCACGTA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_41_CTTGTACT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_42_TCATCCTA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_43_GTAACCGA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_44_ACTGTTAG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_45_GAGACATA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_49_TCTCGGTT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_4_CGGAGGAA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_50_TAGACGGA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_52_ATTCGGAG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_57_TCCGTCTT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_5_TACCGCAA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_60_ACAAGTGC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_61_ACGGCAGC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_65_TTCTGTGT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_66_TGAAGCCA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_67_CGTTCGGT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_68_AGAGGACC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_69_CGCCTTTG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_73_TTGGAGGT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_74_TGCGTGAA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_75_CTGCGAGT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_82_GATCTCTT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_83_CGCTTCCT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_84_AGGATTCA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_91_CACACACT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_92_ACAACGCA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_93_TAGTCGGT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y5_TA_Hi_9_TGACCACT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_10_GTACATCT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_11_CTATCATG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_12_TCTCAGTG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_13_GCCTGCCC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_14_TGGGTTGG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_15_AATAGAGA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_17_TGTGGTTG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_19_CCACTTGG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_21_CTTGACCG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_22_GACCGGAA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_23_CGCCTGAT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_26_GTCGCTAT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_27_CTAGATAG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_29_CGAGATCC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_2_GGTCGTGT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_30_GTATAGGG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_31_TAAGGGTG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_34_GAGCCAAT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_35_CCGACAAG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_36_GCTGTGAA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_37_GCGCTGAT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_38_AGTCCGAT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_39_CCGTTAGG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_41_TGAACTGG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_42_GTAAGGTG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_43_CATAGGTC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_44_ACAAAGCC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_45_GAGGGCAG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_47_CCTACCCG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_49_TCTCACGG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_4_AATGAATT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_50_GTTGTCGG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_51_CGCTAAGC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_52_GCTGGACA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_53_GAGATGCC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_54_GTGTCTGA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_55_TATACATC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_57_TAAGTTCG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_58_GATAGAGG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_59_CAGCTGAC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_5_ACGTACTA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_60_CATCCGTA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_61_GCATCCGG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_62_CCGCATGA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_63_GAAGCGCA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_65_TGTATGCG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_66_GCAATCCG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_67_CGTGTCAC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_68_TGCTCTAG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_69_GAGGTCGC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_6_TCTGGCGA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_70_GTGGTACT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_71_GATTGCGT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_73_TGGCTCAG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_74_GCCTGTTC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_75_CGTTACTA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_77_TTTTACGT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_78_TTACCTTC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_79_ATCGTCCT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_7_GGGTCCAT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_81_TCAGATTC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_82_GCTAACTC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_83_CTCTCTCA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_84_ACTCTTTC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_85_AGTGTAGT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_86_CTACGTAA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_87_CGCACCTA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_89_TTCAGCTC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_91_CCTGAGCA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_92_TAAACATA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_93_AAATACTC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_94_ATGCGTCG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_95_CGAATCGA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_Y7_TA_Hi_9_TACAGGAT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_10_GAATCTGT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_11_CTTCACAT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_12_TAGGACCC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_13_AGCGCCAA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_14_AATTTGCG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_15_ATAACTAG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_16_AGCGATGA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_17_TCCTCAAT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_19_CATGAATG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_20_CATGGGAA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_23_TCACCATT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_25_TAGTCTTG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_26_GTTAGCCT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_27_CTGTACGG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_28_CTCAGATA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_29_AGGTCTAA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_2_GCAACATT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_30_GATCGAAC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_33_TCGAAGTG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_34_GGAATGAT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_35_CACTCGAG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_36_GCTATGAC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_38_GGTAAGAG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_39_GGTGTCGA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_3_CCTAGTAT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_41_TTGGTATG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_42_GCTCCTTG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_43_CTTGCTTC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_44_ACCTTCAA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_45_TGCTGAAC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_46_ATACAGGC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_47_TGGCAAAA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_48_GTACGGAC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_49_TACTTCGG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_4_CGGAAACA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_51_CACATTGC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_53_GTTTTCAC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_54_ACTCAGGA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_55_AACAGCGC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_56_TCCTCTCT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_57_TCAGGAGG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_58_GGATTAGG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_59_CAACCTCC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_5_CGCACGAG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_60_AAGTCGTA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_61_TTGAGAAG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_62_CTTGAATC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_63_AAGCGACT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_65_TCCAGTCG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_66_GTGTGTCG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_67_CTCAAGAC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_68_TTGTGTCT_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_69_GTCACCAG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_6_GTCTGAGG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_71_ACCTCTAC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_73_TCATTGAG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_74_GACCTTAG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_75_CCATGCAC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_77_AAGGGGTA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_78_AGCTGTGC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_80_AACTTATC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_81_TATGCCAG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_82_GCACTGTC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_83_CAAGTAGA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_84_GTTCCACG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_85_TTCCTACA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_86_TCCGGGTA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_87_GGACACGG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_89_TACTAGTC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_90_GATTCATC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_91_CGACTGCA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_92_TATTGGAG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_93_GTGGCCAA_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_94_TCGGACCG_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane3_Tom_Y8_TA_Hi_96_TGGTTGAC_L003_22540_7_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_11_GCGATTAC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_12_AGGCAGCT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_13_TGTCATCT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_16_AGGACACT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_17_GCCAATGT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_21_AGTCCAAC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_22_CTCGTCGA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_23_AGCCGTGA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_26_TTGCGTAC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_27_GTGCAGTA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_29_TCTGACGC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_31_AGGTATCC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_34_TGACAGAC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_35_GCTATGGA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_36_ATCAACCG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_38_ATAAGACT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_39_CTGTTTGA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_3_GATGGTCC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_40_CATACTAC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_42_TCATCCTA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_43_GTAACCGA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_44_ACTGTTAG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_47_TTGGAGCA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_4_CGGAGGAA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_50_TAGACGGA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_51_GCCTTACA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_52_ATTCGGAG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_53_AGCAAGTT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_54_AAGCCGAA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_56_GCGTAGGT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_57_TCCGTCTT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_58_TCTCTTCA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_59_GCAGGTAA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_5_TACCGCAA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_60_ACAAGTGC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_61_ACGGCAGC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_62_ATTGCACA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_63_AGGTAGAC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_66_TGAAGCCA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_67_CGTTCGGT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_68_AGAGGACC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_69_CGCCTTTG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_6_TCGTGGTT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_70_TAGCGAGA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_72_AACTTTTA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_73_TTGGAGGT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_7_TGAGTAAG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_81_TGATACGT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_82_GATCTCTT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_84_AGGATTCA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_86_GCGGGTCT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_87_CGGTTGGG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_8_AGCTCTTT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_92_ACAACGCA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_94_ATGCAAAG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O1_TA_Hi_95_GCCGAACC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_10_GAATCTGT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_11_CTTCACAT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_12_TAGGACCC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_14_AATTTGCG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_15_ATAACTAG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_19_CATGAATG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_20_CATGGGAA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_21_AGGACGAT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_22_AGTTGAAA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_23_TCACCATT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_26_GTTAGCCT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_27_CTGTACGG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_28_CTCAGATA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_29_AGGTCTAA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_30_GATCGAAC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_31_GCGTGAAC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_32_GCTTAAAC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_35_CACTCGAG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_36_GCTATGAC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_37_ATTAGCGG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_38_GGTAAGAG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_39_GGTGTCGA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_41_TTGGTATG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_43_CTTGCTTC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_44_ACCTTCAA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_45_TGCTGAAC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_46_ATACAGGC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_47_TGGCAAAA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_48_GTACGGAC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_50_GAGGATGG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_51_CACATTGC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_52_CAAAACCG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_53_GTTTTCAC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_55_AACAGCGC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_56_TCCTCTCT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_57_TCAGGAGG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_59_CAACCTCC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_60_AAGTCGTA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_61_TTGAGAAG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_62_CTTGAATC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_63_AAGCGACT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_64_ACAGAAGA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_65_TCCAGTCG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_66_GTGTGTCG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_67_CTCAAGAC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_68_TTGTGTCT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_69_GTCACCAG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_70_AAGTAACA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_71_ACCTCTAC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_73_TCATTGAG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_74_GACCTTAG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_75_CCATGCAC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_77_AAGGGGTA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_78_AGCTGTGC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_79_GCTGGTTG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_7_ACTTTACT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_82_GCACTGTC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_83_CAAGTAGA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_84_GTTCCACG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_85_TTCCTACA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_86_TCCGGGTA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_87_GGACACGG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_89_TACTAGTC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_90_GATTCATC_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_91_CGACTGCA_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_92_TATTGGAG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_94_TCGGACCG_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

lane2_Tom_O5_TA_Hi_95_CTTCGGCT_L002_22540_5_R1_val_1_GRCm38_hisat2.bam

So, there are these Tom entries:

(base) CS313BQin:Downloads hqin$ head -n 1 GSE121364_Table_raw_counts_RNA_QSC.txt | fmt -1| cut -c 7-13 | sort | uniq

Tom_O1_

Tom_O5_

Tom_Y4_

Tom_Y5_

Tom_Y7_

Tom_Y8_

The mouse id are explained on NCBI

For Y8_TA_Hi_9, see https://www.ncbi.nlm.nih.gov/biosample/SAMN10249737

age 2 months, mouse id Y8

It seems O1 are old mouse

O1_TA_Hi_11 [scRNA-seq]
Sample type	SRA

Source name	Tibialis anterior muscles
Organism	Mus musculus
Characteristics	strain: MGI: 5308730 cell type: Muscle stem cells age: 24 months mouse id: O1