Tuesday, March 26, 2019

ipad zoom meeting sharing bug fixed


Zoom cannot share screen on ipad.

Removed and reinstalled Zoom, fixed this problem.

Monday, March 18, 2019

porcupoine problem



https://en.wikipedia.org/wiki/List_of_paradoxes

power of good stories


Friday, March 15, 2019

bibtex, pdflatex


applejack:bmc_netwk_aging_manuscript hqin$ bibtex bmc_networkaging
This is BibTeX, Version 0.99d (TeX Live 2016)
The top-level auxiliary file: bmc_networkaging.aux
The style file: bmc-mathphys.bst
Database file #1: qin_networkaging.bib


pdflatex bmc_networkaging

pdflatex bmc_networkaging


Bibtex from PubMed, TexMed


https://www.bioinformatics.org/texmed/


Friday, March 1, 2019

**** cpsc4999 plan

Key topics
Linux
RNAseq
R/Rstudio Rmd

Online:
Regular expression online exercise

RNAseq
biological network


Potential student projects: 
time lapsed image analysis
rDNA reads in yeast genomes ~ lifespan
chemical compounds
network controllability
yeast RLS ~ genomics features
prediction of essential and non-essential genes.
ecology network analysis
aging data comparison
RNN reverse engineering of gene interactions


Reference:
data visualization book
https://serialmentor.com/dataviz/

http://hongqinlab.blogspot.com/2015/06/ngs-tutorials.html
http://www-personal.une.edu.au/~cgondro2/Rcourse.htm
Jackson lab workshop
Data Carpentry,
https://github.com/data-lessons/genomics-workshop
https://data-lessons.github.io/genomics-workshop/ 

EdX genomics course

how to read a scientific paper


https://violentmetaphors.com/2013/08/25/how-to-read-and-understand-a-scientific-paper-2/?fbclid=IwAR0p8P5EAi8Mir_rDyH-TLY6uUsn9ZVa2YvLMgjoEj3H6lxQdYqUvAKTnHU


Spearman footrule distance

Spearman footrule distance, a meaningful way to combine value and ranks

https://people.revoledu.com/kardi/tutorial/Similarity/FootruleDistance.html