DNABERT waterfield

 

todo: DNABERT2

• DNABERT is installed.

  - Found repo: https://github.com/jerryji1993/DNABERT.git

  - Cloned to: DNABERT (commit b6da04e)

  - Created Conda env: dnabert (Python 3.6)

  - Installed:

      - DNABERT in editable mode (pip install -e .)

      - Example dependencies

      - pybedtools/pysam (via mamba + pip wheel fallback)

      - PyTorch stack (torch 1.10.2+cu102, torchvision 0.11.2)

  Verification passed in dnabert:

  - torch 1.10.2+cu102

  - transformers 2.5.0

  - pybedtools 0.8.1

  - pysam 0.19.0

  Use it with:

  source ~/miniforge3/etc/profile.d/conda.sh

  conda activate dnabert

  cd /home/xxx/github/DNABERT

waterfield GPUs

 

GPU Inventory Summary

GPU Type	Partition	Total Nodes	GPUs per Node	Total GPUs
NVIDIA RTX P6000	rtxp6000flex-1	30	1	30
	rtxp6000flex-2	12	2	24
	rtxp6000flex-4	8	4	32
	rtxp6000flex-8	8	8	64
NVIDIA H100	h100flex-1	30	1	30
	h100flex-2	8	2	16
	h100flex-4	8	4	32
	h100flex-8	8	8	64
NVIDIA H200	h200flex-8	8	8	64
NVIDIA B200	b200flex-8	2	8	16
NVIDIA MegaGPU*	reserved-clync008	1	8	8

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Total Counts by Model

• RTX P6000 Series: 150 GPUs

• H100 Series: 142 GPUs

• H200 Series: 64 GPUs

• B200 Series: 16 GPUs

• Reserved/Special: 8 GPUs