Friday, October 31, 2025

ODU Google MonarchSphere

 

https://www.odu.edu/article/old-dominion-university-and-google-launch-a-first-of-its-kind-ai-incubator-for-higher


https://www.meritalkslg.com/articles/old-dominion-university-launches-monarchsphere-ai-incubator/?utm_source=chatgpt.com


  • Brian O. Hemphill, Ph.D. – President of Old Dominion University

  • Matthew Schneider – Managing Director, National, U.S. State, Local, and Education, Google

  • Tony Orlando (B.S. ’91, MBA ’98) – Managing Director, Partner Ecosystem and Specialty Solutions, Google

  • Chrysoula Malogianni, Ph.D. – Senior Associate Vice President for Digital Innovation, ODU

  • Nina Rodriguez Gonser – Vice President for Digital Transformation and Technology, ODU

  • The Hon. Don Scott – Speaker of the Virginia House of Delegates

  • The Hon. L. Louise Lucas – President Pro Tempore, Senate of Virginia

  • Wednesday, October 29, 2025

    gtc day 2

     

    meet up, pathogen AI, 

    microbial, multi modal



    GWU jame hahn AI, pediatrics

     GWU jame hahn AI, pediatrics

    https://engineering.gwu.edu/james-hahn


    https://github.com/Ezharjan/AutoSceneGen

     

    https://ezharjan.github.io/AutoSceneGen/

    https://github.com/Ezharjan/AutoSceneGen


    https://github.com/Ezharjan?tab=repositories



    Tuesday, October 28, 2025

    gtc day 1

     https://www.nvidia.com/en-us/high-performance-computing/earth-2/


    AI to biology is like math to physics


    george church, dyno, manifold, 

    Company Focus / AI-relevance Notes
    Lila Sciences AI-agent platform startup George Church joined as Chief Scientist in 2025 for Lila Sciences, which is specifically described as an “AI agent platform” startup. (Wikipedia)
    GC Therapeutics Cell-therapy company, includes machine-learning / “plug & play” tech Although primarily a biotech/cell-therapy company, GC Therapeutics uses a platform that combines synthetic biology, gene editing, cell engineering and machine learning. (Fierce Biotech)


    david baker, cofounder


    aridunah duvan, ceo 

    peter korte, simens 

    bret, figure AI

    foxxconn, Liu, ceo


    CPU general purpose to GPU accelerated computing platform shift

    reinvent new algorithms

    CUDA-X libraries, 300+

    medical imaging framework

    genomic processing


    codesign 

    mixture of expert on the chip, thinking gpu, 32 expert gpus




    Thursday, October 23, 2025

    20251023Thu transformer, part 2

      == pre-class to do: 

    post video:

    calendar email invitation: 

    homework assignment, data camp, 

    socrative sign in

    update Canvas course materials, update learning objectives. assignments as needed:

    Test-run code: skip. 

    kindle book. using ipad to highlight key points. 


    == In-class to do: 

    clean up destktop space, calendars, 

    ZOOM, live transcript (start video recording). 

    Socrative sign in, 

    transformer gpt.ipynb on vertex ai, 

     decoder only

     causal masks, 

     temperature 


    student presentation: Google Day practice

    breakout rooms:   course project. 


    How Alicia Jackson Could Redefine ARPA-H’s AI Future

     https://www.politico.com/newsletters/future-pulse/2025/10/22/arpa-h-new-director-00618080


    How Alicia Jackson Could Redefine ARPA-H’s AI Future


    Alicia Jackson’s DARPA roots could profoundly reshape how ARPA-H approaches artificial intelligence — especially generative AI in the life sciences.


    While POLITICO reports that the Trump administration cut several ARPA-H AI programs in areas like AI-driven cancer detection and preventive care, that doesn’t mean a retreat from AI. It signals a strategic pivot — from broad, exploratory projects to mission-focused, biologically grounded applications.


    🔹 1. From Algorithms to Living Systems


    At DARPA’s Biological Technologies Office, Jackson led visionary programs such as Living Foundries and BRICS, advancing programmable biology and biosafety.

    Her philosophy treats AI as a design engine — a tool for creating biological systems, not just interpreting them.

    Jackson’s Focus

    How Generative AI Fits In

    Programmable biology

    AI models that design new enzymes, antibodies, or pathways.

    Biomanufacturing efficiency

    Reinforcement learning to optimize cell or microbial production.

    Predictable, controllable systems

    AI that forecasts biological stability and detects anomalies in real time.


    🔹 2. Translating AI into the Real World


    Jackson’s entrepreneurial work — from Evernow to Drawbridge Health — points to a leader focused on translation and commercialization.

    Expect ARPA-H to favor AI that accelerates real-world deployment, not theoretical modeling.


    Likely directions:

    • Digital biomanufacturing twins for faster FDA qualification

    • Human-in-the-loop generative design for explainable AI innovation

    • Regulatory-ready AI models aligned with FDA’s evolving digital-health framework


    🔹 3. Safety, Robustness, and Governance at the Core


    Jackson’s history with Safe Genes and BRICS highlights her awareness of biosecurity and dual-use risks.

    Her ARPA-H will likely push for “safe and governed” AI, emphasizing:

    • Explainable generative models for biology

    • Ethical-control frameworks for AI that manipulates living systems

    • Red-teaming and validation pipelines — directly inspired by DARPA safety protocols


    In practice, that means generative tools will need built-in containment logic to prevent unintended or dangerous outputs.


    🔹 4. What Future ARPA-H AI Projects Might Look Like

    ARPA-H Priority Area

    AI Application Example

    Strategic Outcome

    Rapid Bio-Design Platforms

    Foundation models for proteins and RNA

    Faster molecule discovery for health and defense

    Scalable Biomanufacturing

    Generative control of microbial or cell-free systems

    On-demand vaccines, hormones, or nutrients

    Neuro-Restoration Interfaces

    Generative neural encoding

    Brain recovery and adaptive prosthetics

    Women’s Health & Aging

    Personalized AI for hormonal and aging biomarkers

    Precision-health insights with consumer impact

    AI Safety in Biotechnology

    Red-team and governance frameworks

    Mitigate dual-use and biosecurity risks


    🔹 5. The Bigger Picture


    Under Jackson’s leadership:

    • AI won’t vanish — it will integrate deeply into bioengineering.

    • Generative AI will fund tangible biological prototypes, not abstract tools.

    • Open-ended “AI-for-everything” research will give way to DARPA-style challenges — measurable, outcome-driven, and safety-conscious.


    In short, ARPA-H’s next AI chapter will likely merge engineering discipline with biological imagination — turning AI into a creative partner for the life sciences, not just an observer.


    Tuesday, October 21, 2025

    synapse request access

     

    AD Knowledge Portal

    https://www.synapse.org/Synapse:syn31512863

    Thursday, October 16, 2025

    influenza virus, known as D/HY11,

     A team of researchers at the Changchun Veterinary Research Institute in China has zeroed in on a specific strain of the influenza virus, known as D/HY11, which emerged in cattle in northeast China in 2023.


    model the evolution and specici jump using viralGPT. 

    policy map

     policy map

    policymap.com

    https://www.policymap.com/

    maternal vulnerability

     maternal vulnerability

    https://mvi.surgohealth.com/

    BMS program

     

    BMS meeting. 


     Robert Bruno, 3D bioprint and cancer

     Lifang Yang

     Larry Sanford

     Frank Lattanzio

     Patrick Sachs

     Siqi Guo

     Ebony Clark

     Lisa Shollengerger

     Peter Mollica


    • Lifang Yang: Focuses on fundamental and translational cancer research, specifically cancer pathogenesis, biomarker development, and therapeutic approaches. Her lab studies tumor cells, tumor microenvironment, extracellular vesicles, proteomics, and cancer disparities to advance precision oncology through multi-omics and bioinformatics approaches.
    • Frank Lattanzio: Connected to bioelectrics research, including applications of nanosecond pulsed electric fields (nsPEFs) in cancer treatment and cellular electropermeabilization mechanisms.
    • Patrick Sachs: Associated with biomedical and translational sciences, likely focusing on biomedical engineering and tumor microenvironment studies combined with 3D bioprinting and cancer research models.
    • Siqi Guo: Involved in bioelectric research, including DNA vaccination delivery, electrotransfer, and electroporation-mediated gene transfer techniques; associated with cellular and molecular response to electric fields.
    • Siqi Guo is a Research Associate Professor affiliated with the Frank Reidy Research Center for Bioelectrics. His grants include a commercial contract worth about $102,900 (2016-2017) for studying nanosecond electric pulses (NSEPS) as an ablation-immunotherapy for advanced pancreatic cancer. His work focuses on cancer, biotechnology, and bioelectric therapies like nano-pulse stimulation and gene electrotransfer for cancer treatment. He leads projects advancing novel immunotherapy techniques based on electric pulse technology.
    • Lifang Yang, listed as an instructor at Eastern Virginia Medical School collaborating with ODU, shares in recent multidisciplinary seed funding ($42,000) supporting research on synergistic effects of nano-pulse treatment combined with cold plasma reactive species for cancer treatment. Her expertise centers on cancer pathogenesis, tumor microenvironment, extracellular vesicles, and biomarker discovery aiming to improve precision oncology through multi-omics and bioinformatics.


    Tuesday, October 14, 2025

    20251016Thu Transformer

    == pre-class to do: 

    post video

    calendar email invitation: 

    socrative sign in

    update Canvas course materials, update learning objectives. assignments as needed:

    kindle book. 

    == In-class to do: 

    clean up destktop space, calendars, 

    ZOOM, live transcript (start video recording). 

    ** Google Day presentation; 

    Socrative sign in, 

    student presentation; 

    breakout rooms:   course project poster work; 


    Thursday, October 2, 2025

    lect 6, engery based model

       == pre-class to do: 

    post video of lect 4 LSTM

    calendar email invitation: 

    homework assignment, data camp, 

    socrative sign in

    update Canvas course materials, update learning objectives. assignments as needed:

    Test-run code: skip. 

    kindle book. using ipad to highlight key points. 


    == In-class to do: 

    clean up destktop space, calendars, 

    ZOOM, live transcript (start video recording). 

    Socrative sign in, 

    student presentation; Terry and ?? 

    breakout rooms:   course project


    Monday, September 29, 2025

    NVIDIA Accelerates Robotics Research and Development With New Open Models and Simulation Libraries

     

    “Humanoids are the next frontier of physical AI, requiring the ability to reason, adapt and act safely in an unpredictable world,” said Rev Lebaredian, vice president of Omniverse and simulation technology at NVIDIA. “With these latest updates, developers now have the three computers to bring robots from research into everyday life — with Isaac GR00T serving as robot’s brains, Newton simulating their body and NVIDIA Omniverse as their training ground.”