This site is to serve as my note-book and to effectively communicate with my students and collaborators. Every now and then, a blog may be of interest to other researchers or teachers. Views in this blog are my own. All rights of research results and findings on this blog are reserved. See also http://youtube.com/c/hongqin @hongqin
Monday, October 31, 2016
Friday, October 28, 2016
Goldwater student scholarship
If you have any students (sophomore or junior) that are performing research in your laboratory and are standouts, they may be eligible to apply for the Goldwater Scholarship. The Goldwater Scholarship is for students with an evident passion for research with goals involving graduate school in natural science, mathematics or engineering (A list of fields of study is attached). To be competitive they should have a high GPA (3.8 or above), have experience doing research in computer science or engineering (preferably with a presentation/paper), and can obtain 3 stellar letters of recommendation. Send any names that you think are deserving for consideration to David Giles (david-giles@utc.edu) (or ask them to contact him directly).
Wednesday, October 26, 2016
Tuesday, October 25, 2016
NIH CSR study sections
previous NIA special emphasis panel for the systems biology of aging was ZAG1 ZIJ-2(J2), https://public.era.nih.gov/ pubroster/jsp/preSepIndex.jsp? AGENDA=256254&CID=100201
Monday, October 24, 2016
UTC parking
http://www.utc.edu/auxiliary-services/parking/faq.php
Do night students have to buy a decal?
No one who comes on campus after 5 p.m. needs a decal as long as they do not park in spots that are enforced 24-hours (Lots 21, 24, 47, 48, and 51, Fire Lane, Handicap, and specially marked spots).
Do night students have to buy a decal?
No one who comes on campus after 5 p.m. needs a decal as long as they do not park in spots that are enforced 24-hours (Lots 21, 24, 47, 48, and 51, Fire Lane, Handicap, and specially marked spots).
Sunday, October 23, 2016
robust statistics methods and measures
consistency
asymptotic bounds
cook's distance
https://en.wikipedia.org/wiki/Cook%27s_distance
M-estimator
Influence function and sensitivity curves
asymptotic bounds
cook's distance
https://en.wikipedia.org/wiki/Cook%27s_distance
M-estimator
Influence function and sensitivity curves
Friday, October 21, 2016
Qin schedule 2017 Spring
schedule updated in Dec 2016
schedule posted in Oct 2016
Biology | ||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CRN | Subj | Crse | Sec | Cmp | Cred | Title | Days | Time | Cap | Act | Rem | WL Cap | WL Act | WL Rem | Instructor | Date (MM/DD) | Location | Attribute | ||||
25247 | BIOL | 3250 | 02 | C | 3.000 | Genetics | TR | 12:15 pm-01:30 pm | 36 | 36 | 0 | 0 | 0 | 0 | Hong Qin (P) | 01/09-05/02 | HOLT 308 | Upper Division Credit | ||||
Computer Science | ||||||||||||||||||||||
CRN | Subj | Crse | Sec | Cmp | Cred | Title | Days | Time | Cap | Act | Rem | WL Cap | WL Act | WL Rem | Instructor | Date (MM/DD) | Location | Attribute | ||||
24279 | CPSC | 1100 | 03 | C | 4.000 | Fundamentals of Computer Science | TR | 05:30 pm-06:45 pm | 25 | 14 | 11 | 0 | 0 | 0 | Hong Qin (P) | 01/09-05/02 | EMCS 301 | |||||
W | 05:30 pm-07:20 pm | Hong Qin (P) | 01/09-05/02 | EMCS 306 | it |
schedule posted in Oct 2016
Biology | ||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
CRN | Subj | Crse | Sec | Cmp | Cred | Title | Days | Time | Cap | Act | Rem | WL Cap | WL Act | WL Rem | Instructor | Date (MM/DD) | Location | Attribute | ||||
25247 | BIOL | 3250 | 02 | C | 3.000 | Genetics | TR | 12:15 pm-01:30 pm | 36 | 0 | 36 | 0 | 0 | 0 | Hong Qin (P) | 01/09-05/02 | HOLT 308 | Upper Division Credit | ||||
Computer Science | ||||||||||||||||||||||
CRN | Subj | Crse | Sec | Cmp | Cred | Title | Days | Time | Cap | Act | Rem | WL Cap | WL Act | WL Rem | Instructor | Date (MM/DD) | Location | Attribute | ||||
24279 | CPSC | 1100 | 03 | C | 4.000 | Fundamentals of Computer Science | TR | 05:30 pm-06:45 pm | 25 | 0 | 25 | 25 | 0 | 25 | Hong Qin (P) | 01/09-05/02 | EMCS 301 | Computer Literacy and CECS Differential Course Fee and Lab/Studio Fee and Lower Division Credit | ||||
W | 05:30 pm-07:20 pm | Hong Qin (P) | 01/09-05/02 | EMCS 306 | Computer Literacy and CECS Differential Course Fee and Lab/Studio Fee and Lower Division Credit |
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*** references on network changes during aging
Gloria Yiu, Alejandra McCord, Alison Wise, Rishi Jindal, Jennifer Hardee, Allen Kuo, et al.
in The journals of gerontology. Series A, Biological sciences and medical sciences
(2008)
protein mass spec data
1,2,3,4 infusing quantiataive literary into introductory biology. CBE, 2010. Septh, et al.
Friday, October 14, 2016
UTC dinning
https://utc.campusdish.com/Commerce/MyAccount/OrderHistory.aspx
balance check for mocscard
old: https://utc.managemyid.com/
2017 Spring, changed to https://get.cbord.com/utc/full/funds_home.php
Thursday, October 13, 2016
Computational systems biology postdoc at NIMBioS
Postdoctoral Fellowship in Computational Systems Biology at NIMBioS
(NEW!) Postdoctoral Fellowship in Computational Systems Biology at NIMBioS
The National Institute for Mathematical and Biological Synthesis (NIMBioS), located at the Univ. of Tennessee, Knoxville, is currently accepting applications for a two-year postdoctoral fellowship in computational biology with an interest in using systems approaches to solve problems in cell biology, cancer biology, immunology or development biology.
An applicant may propose to use modeling, simulation, or analysis to produce useful biological information and concepts that current theories cannot provide. The proposed study should address biological problems involving complexity and dynamics of networks at molecular and/or cellular levels. Examples of the biological topics include, but are not limited to:
• Cell cycle progression, cellular senescence, cell differentiation and death.
• Plasticity of cells during development or cancer progression.
• Cancer metastasis and dormancy.
• Dynamical response of immune system (including response to viral infection).
• Development of immune cells.
• Embryonic development.
• General theories concerning biological networks.
Examples of the proposed computational methods include, but are not limited to:
• Ordinary Differential Equation (ODE), Partial Differential Equation (PDE), and stochastic methods.
• Multiscale modeling.
• Spatiotemporal dynamical modeling.
• Parameter optimization.
• Analysis using bifurcation theory, landscape theory, and parameter-free methods.
• Processing of omics data for dynamical modeling (e.g., genomic, transcriptomic, proteomic data).
• Integration of multiscale data for dynamical modeling (e.g. transcriptomic, epigenomic, subcellular, cellular data).
Support: annual stipend of $51,000, full University of Tennessee employee fringe benefits, and an annual travel allowance of $3,000.
Deadline: The deadline for fellowship research beginning as early as late spring 2017 is December 11, 2016. All letters of recommendation must be submitted before the request deadline.
How to apply: Follow the guidelines at http://www.nimbios.org/positions/
Wednesday, October 12, 2016
Differential Stoichiometry among Core Ribosomal Proteins
Slavov 2015
http://www.cell.com/cell-reports/abstract/S2211-1247%2815%2901081-5
Slavov15 argues for cancer connections.
Q: does this provide a link on CR effect?
http://www.cell.com/cell-reports/abstract/S2211-1247%2815%2901081-5
Slavov15 argues for cancer connections.
Q: does this provide a link on CR effect?
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