Wednesday, August 30, 2017
Monday, August 28, 2017
Sunday, August 27, 2017
fastlane collaborative proposal
collaborative proposal from multiple institutions
https://www.nsf.gov/pubs/policydocs/pappg17_1/pappg_2.jsp
https://www.nsf.gov/pubs/policydocs/pappg17_1/pappg_2.jsp#IID3
For non-lead organizations: cover sheet, biographic sketches, budget and justification, C&P, Facility, Collaboration and other affiliations.
To submit the collaborative proposal, the following process must be completed:29
(i) Each non-lead organization must assign their proposal a proposal PIN. This proposal PIN and the temporary proposal ID generated by FastLane when the non-lead proposal is created must be provided to the lead organization before the lead organization submits its proposal to NSF.
(ii) The lead organization must then enter each non-lead organization(s) proposal PIN and temporary proposal ID into the FastLane lead proposal by using the "Link Collaborative Proposals" option found on the FastLane "Form Preparation" screen.
(iii) All components of the collaborative proposal must meet any established deadline date, and failure to do so may result in the entire collaborative proposal being returned without review.
(iv) If funded, both lead and non-lead organizations are required to submit separate annual and final project reports. These reports should reference the work of the collaborative, while focusing on the distinct work conducted at each funded organization.
Friday, August 25, 2017
SERNEC examples and some ideas, batch download
http://sernecportal.org/portal/taxa/index.php?taxon=246202
http://sernecportal.org/portal/collections/individual/index.php?occid=6337203
some species disppaeared from current locations. dynamic distribution of species. visualization.
SERNEC offer batch-download of meta information that contains image_URL.
I pasted the URL into csv, and batch download the images with wget.
wget -i URL_list.csv
see http://xmodulo.com/how-to-download-multiple-files-with-wget.html
SERNEC offer batch-download of meta information that contains image_URL.
I pasted the URL into csv, and batch download the images with wget.
wget -i URL_list.csv
see http://xmodulo.com/how-to-download-multiple-files-with-wget.html
Thursday, August 24, 2017
Monday, August 21, 2017
*** H2O2 LOH manuscript to do
revise results, update figures
error-bar figures were done Dec 2013.
peerJ format
ctt1
sod1/2 results
verify Qin08 PONE results on mitotic asymmetry
ROS reference
Qin comment:
In H2O2-LOH project, we used mid-log phased cells. In Qin08, we used the transition between stationary phase and late-log phase. So, the difference in 1/2 black version full-black could be due to the different mitotic status.
Sunday, August 20, 2017
Camtasia, two tracks, zoom and crops
In Camtasia,
multiple tracks of video can be loaded. I can split the tracks into different segments, crop them and then scale back to fit the screen.
Friday, August 18, 2017
biology books for computer scientists
A Computer Scientist's Guide to Cell Biology 2007th Edition
https://www.amazon.com/Computer-Scientists-Guide-Cell-Biology/dp/038748275X
Saturday, August 12, 2017
Qin office contacts
Hong Qin
Associate Professor of
Computer Science and Biology
College of Engineering
and Computer Science, SimCenter, and College of Arts and Sciences
The University of
Tennessee at Chattanooga
Dept. 2302, EMCS313B
615 McCallie Avenue,
Chattanooga, TN 37403-2598
Phone (423)
425-4329 (Comp Sci) and 423 425-5492 (SimCenter)
Twitter: @hongqin
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Thursday, August 3, 2017
WORD "compile error in hidden module:link" , osX
applejack:_s hqin$ cd
applejack:~ hqin$ cd Library/Group\ Containers/UBF8T346G9.Office/User\ Content.localized/Startup.localized/Word/
applejack:Word hqin$ ls
linkCreation.dotm ~$nkCreation.dotm
applejack:Word hqin$ mkdir /tmp/Word.start.folder
applejack:Word hqin$ mv linkCreation.dotm /tmp/Word.start.folder/.
applejack:Word hqin$ mv * /tmp/Word.start.folder/.
#This fixed the problem.
see
https://social.technet.microsoft.com/Forums/en-US/f0a463ed-97a3-4f93-90fe-5071be819ce6/compile-error-in-hidden-modulelink-on-mac-365?forum=officeitpro
CORGIS Datasets Project, virginia tech
CORGIS Datasets Project
The Collection of Really Great, Interesting, Situated Datasets
virginia techhttps://think.cs.vt.edu/corgis/
information retriveal and tex mining
"Text data management and analysis", Chenxian Zhai, San Massung, UIUC
food calorie estimation, deep learning
"During the 2015 Rework Deep Learning Summit in Boston, Google scientist Kevin Murphy presented a deep learning algorithm that was used to analyze static food image. By analyzing the composition of the food in picture, the algorithm can calculate how much calories the dish has."
https://syncedreview.com/2017/08/03/deep-learning-based-food-calorie-estimation-method-in-dietary-assessment/?utm_content=buffer9afd1&utm_medium=social&utm_source=twitter.com&utm_campaign=buffer
Reference
[1] W. Zheng, D. F. Mclerran, B. Rolland, X. Zhang, M. Inoue, K. Matsuo, J. He, P. C. Gupta, K. Ramadas, S. Tsugane, Association between body- mass index and risk of death in more than 1 million asians, New England Journal of Medicine 364 (8) (2011) 719–29.
[2] W. Jia, H. C. Chen, Y. Yue, Z. Li, J. Fernstrom, Y. Bai, C. Li, M. Sun, Accuracy of food portion size estimation from digital pictures acquired by a chest-worn camera., Public Health Nutrition 17 (8) (2014) 1671–81.
[3] Z. Guodong, Q. Longhua, Z. Qiaoming, Determination of food portion size by image processing, 2008, pp. 119–128.
[4] Y. Bai, C. Li, Y. Yue, W. Jia, J. Li, Z. H. Mao, M. Sun, Designing a wearable computer for lifestyle evaluation., in: Bioengineering Conference, 2012, pp. 93–94.
[5] P. Pouladzadeh, P. Kuhad, S. V. B. Peddi, A. Yassine, S. Shirmohammadi, Mobile cloud based food calorie measurement (2014) 1–6.
[6] S. Ren, K. He, R. Girshick, J. Sun, Faster r-cnn: Towards real-time object detection with region proposal networks, in: Advances in neural informa- tion processing systems, 2015, pp. 91–99.
[7] C. Rother, V. Kolmogorov, A. Blake, Grabcut: Interactive foreground extraction using iterated graph cuts, in: ACM transactions on graphics (TOG), Vol. 23, ACM, 2004, pp. 309–314.
[2] W. Jia, H. C. Chen, Y. Yue, Z. Li, J. Fernstrom, Y. Bai, C. Li, M. Sun, Accuracy of food portion size estimation from digital pictures acquired by a chest-worn camera., Public Health Nutrition 17 (8) (2014) 1671–81.
[3] Z. Guodong, Q. Longhua, Z. Qiaoming, Determination of food portion size by image processing, 2008, pp. 119–128.
[4] Y. Bai, C. Li, Y. Yue, W. Jia, J. Li, Z. H. Mao, M. Sun, Designing a wearable computer for lifestyle evaluation., in: Bioengineering Conference, 2012, pp. 93–94.
[5] P. Pouladzadeh, P. Kuhad, S. V. B. Peddi, A. Yassine, S. Shirmohammadi, Mobile cloud based food calorie measurement (2014) 1–6.
[6] S. Ren, K. He, R. Girshick, J. Sun, Faster r-cnn: Towards real-time object detection with region proposal networks, in: Advances in neural informa- tion processing systems, 2015, pp. 91–99.
[7] C. Rother, V. Kolmogorov, A. Blake, Grabcut: Interactive foreground extraction using iterated graph cuts, in: ACM transactions on graphics (TOG), Vol. 23, ACM, 2004, pp. 309–314.
Wednesday, August 2, 2017
fix apple pen connection problem
My steps to fix apple pen connection with iPadPro
1) make sure Applepen is completely recharged.
2) remove the old apple-pen link from iPadPro
3) turn iPadPro into airplane mode (this turns off Bluetooth by default)
4) Plug applePen into lighting bolt connection on iPadPro. This lead to paring message. Click pairing.
I then open up notes and activate ApplePen in smart-stylus setting. It worked.
1) make sure Applepen is completely recharged.
2) remove the old apple-pen link from iPadPro
3) turn iPadPro into airplane mode (this turns off Bluetooth by default)
4) Plug applePen into lighting bolt connection on iPadPro. This lead to paring message. Click pairing.
I then open up notes and activate ApplePen in smart-stylus setting. It worked.
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