**** cpsc4999 plan

Key topics
Linux
RNAseq
R/Rstudio Rmd

Online:
Regular expression online exercise

RNAseq
biological network


Potential student projects: 
time lapsed image analysis
rDNA reads in yeast genomes ~ lifespan
chemical compounds
network controllability
yeast RLS ~ genomics features
prediction of essential and non-essential genes.
ecology network analysis
aging data comparison
RNN reverse engineering of gene interactions


Reference:
data visualization book
https://serialmentor.com/dataviz/

http://hongqinlab.blogspot.com/2015/06/ngs-tutorials.html
http://www-personal.une.edu.au/~cgondro2/Rcourse.htm
Jackson lab workshop
Data Carpentry,
https://github.com/data-lessons/genomics-workshop
https://data-lessons.github.io/genomics-workshop/ 

EdX genomics course