ts conda create condaR403

 # Hong will install anaconda R403 in a conda environment on ts117. This strategy worked. 

conda create --name condaR403

  environment location: /home/hqin/.conda/envs/condaR403

-bash-4.2$ conda activate condaR403

conda install -c r r-base #??

# which R shows an R403 inside an conda environment. 

R

install.packages('tidyverse') #this seems worked. 

install.packages('EpiNow2')  #this run for a while

non-zero exit again due to V8. 

(condaR403) -bash-4.2$ conda install -c conda-forge libv8

$ conda install -c conda-forge r-randomcolor

R

install.packages('EpiNow2') #this worked!!!!

> library(EpiNow2)

> 

module load sge

qsub epinow2.pbs #this runs!!!!

(condaR403) -bash-4.2$ cat epinow2.pbs

#!/bin/bash -l

#$ -S /bin/bash

#$ -N epinow_job

#$ -V

#$ -cwd

. /etc/profile.d/modules.sh

module load anaconda/5.2.0

source activate condaR403

R -f batch_Rt_by_county.R --args 900 901 1 4/1/2020 5/1/2020