Singularity container environment is now available on Firefly. And I prepared an image for running Alphafold and designed a customizable run script for interacting with the instance.
To quickly test Alphafold with default config and input, run the following:
$ bash /opt/ohpc/pub/singularity/test-scripts/alphafold-2/alphafold-singularity-run.sh
Here's a list of locations for relevant directories:
- Alphafold inference data: /scr/alphafold-data
- Singularity image Alphafold: /opt/ohpc/pub/singularity/images/alphafold-2.sif
- Sample run script and fasta file: /opt/ohpc/pub/singularity/test-scripts/alphafold-2
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