== pre-class to do:
socrative questions (questions on contents from last lecture ): Q what do you think are the most important concepts or skills that we have discussed today?
update Canvas course materials, update learning objectives. assignments as needed:
Test-run code:
== In-class to do:
clean up destktop space, calendars,
ZOOM, live transcript (start video recording).
Socrative sign in:
review of bioinformatic basic concepts
+Basic biology concept and data,
Central Dogma: DNA (ATCG), RNA (AUCG), proteins (20 AA). Translation. Transcription. Replication. Genetic table.
Genes. Genomes.
Genome sequences. Expression levels.
+biopython modules
genbank file format; fasta file format
Breakout on final projects.
TODO:
retrieve a CDS?
D614G mutation annotation
https://github.com/QinLab/aln2snv-2020format/blob/a670b48b00dffac244dc6a63bcd12cf6439c73fc/annotate_gwas_with_GFF.ipynb
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