cpsc4180 from gisaid alignment to mutations

 == pre-class to do: 

socrative questions (questions on contents from last lecture ): Q what do you think are the most important concepts or skills that we have discussed today? 

update Canvas course materials, update learning objectives. assignments as needed: 

Test-run code: 

== In-class to do: 

clean up destktop space, calendars, 

ZOOM, live transcript (start video recording). 

Socrative sign in: 

How to identify mutations or variations? 

https://www.ebi.ac.uk/Tools/msa/clustalo/

>one
ChattanoogaIsAGreatPlace
>two
ChattanoogaMaybeAGreatPlace

Use AliView to explain the FASTA alignment file (gaps)

https://github.com/hongqin/Python-CoLab-bootcamp/blob/master/align2snv.ipynb

upload 0613 files to CoLab. This is too slow. So, I switched to run jupyter-notebook on my laptop

* UTC Course Evaluation 

* student presentation.