Showing posts with label complex networks. Show all posts
Showing posts with label complex networks. Show all posts

Saturday, November 25, 2023

transfomer for large social networks

 There are several possible options to use transformer to model large social dynamic networks, depending on the goals and challenges of the task. Here are some examples:

These are some of the options to use transformer to model large social dynamic networks. I hope this helps you. 😊

Monday, June 7, 2021

biological network across scales

 

https://reintegratingbiology.org/wp-content/uploads/2019/12/Netwoks-Across-Scales-Gustavo-Caetano-Anolles.pdf


Saturday, April 10, 2021

edge dynamics are easy to control in power-law and transcription networks

controlling edge dynamics in complex networks

 https://www.nature.com/articles/nphys2327

Nepusz, Vicsek

 "We also find that transcriptional regulatory networks are particularly easy to control. Analytic calculations show that networks with scale-free degree distributions have better controllability properties than uncorrelated networks, and positively correlated in- and out-degrees enhance the controllability of the proposed dynamics."

Qin: interesting point on the positively correlated in and out degree enhance controllability. Any implication in evolution of biological networks? 




Wednesday, November 18, 2020

santolini and barabasi 2017 PNAS

 predicting perturbation patterns from topology of biological networks

sensitivity matrix



The transform from ODE to boolean network is done by signs of the Jacobina matrix. 











network correlation method, barzel and biham 2009

 quantifing the connectivty of a network: the network correlation function method

barzel and biham 2009, Physical review E


Barabasi's group used his method later on.