Monday, April 8, 2013

VCell exercise note, the beginner version

Start VCell and login.

To create a new model,  choose File->New-Biomodel,



In the structure diagram menu, click "species" icon, and use the 'arrow' to add a reaction.


Click reaction, and more window will show.

Right click a parameter that I want to change, 'Kf', and a window will show.


Right click 'Application' to add a new one.
Under "Parameters and Functions", we can specify them again.

Under Simulations, click to add a new simulation.
Click the edit icon (a notepad with pencil) to edit the simulation,



Then click "Run", the green arrow.


Use Frap
Choose the two

















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