a brief list of advantages of the 561-nm (Yellow-Green) Laser for the flow cytometry.
all the RFPs, GFP, CFSE and Fitc when really bright bleed into the PE channel horribly when using just a 488 laser. If you are using the 561 for PE there will be almost no spillover.
— tdTomato detection (fluorescent protein 283% brighter than eGFP)
— MitoTracker Orange (accumulation is dependent upon membrane potential and the dye is well-retained after aldehyde fixation)
— CRISPR-Cas9, an emerging gene-editing (“genome surgery”) tool that frequently uses mCherry reporters. And yellow-green laser is required for optimal excitation of this fluorescent protein
— up to 3.7-fold increase in the stain index with antibodies conjugated with PE and PE based tandem dyes
— greatly expands the choice of fluorochromes
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