deep learning tools

Deep neural networks 

List of potential R packages for deep learning:

deeplearning https://cran.r-project.org/web/packages/deeplearning/index.html

mxnet (GPU) http://mxnet.io/get_started/setup.html#install-the-mxnet-package-for-r

h2o https://cran.r-project.org/web/packages/h2o/index.html

DeepNet

Deeplearning libraries in Python

Torch.ch, academic use, flexibility. deepSEA
Caffe, developed by the Berkely Vision and Learning Center

Theano, transparent use of GPU.

Keras https://keras.io/ . (theano + tensorflow)

Lasagne

Nolearn

Mocha