Monday, October 16, 2017

yeast single cell protein levels

collection of yeast cells and localization pattern

bout CYCLoPs
  • The data stored in CYCLoPs correspond to studies described in Judice L.Y. Koh, Yolanda Chong, Brenda Andrews, Jason Moffat. CYCLoPs - A database of protein fluxes in Yeast Cell (Manuscript in preparation).
  • 18 screens were conducted in the study, comprising of 2 chemical treatments and 1 genetic mutation, they include:
    ScreenConditionTime courseWild-typeScreenConditionTime courseWild-type
    WT3wild-type--RAP60rapamycin treatment60 minWT3
    RAP140rapamycin treatment140 minWT3RAP220rapamycin treatment220 minWT3
    RAP300rapamycin treatment300 minWT3RAP380rapamycin treatment380 minWT3
    RAP460rapamycin treatment460 minWT3RAP540rapamycin treatment540 minWT3
    RAP620rapamycin treatment620 minWT3RAP700rapamycin treatment700 minWT3
    HU80hydroxyurea treatment80 minWT3HU120hydroxyurea treatment120 minWT3
    HU160hydroxyurea treatment160 minWT3rpd3del_1rpd3 knockout-WT3
    rpd3del_2rpd3 knockout-WT3rpd3del_3rpd3 knockout-WT3
    AF100alpha factor treatment100 minWT1AF140alpha factor treatment140 minWT1
    AF180alpha factor treatment180 minWT1

MYSQL is used.

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