Thursday, May 10, 2018

generate github repo for publication support, network aging manuscript

applejack:network_aging_ms_draft hqin$ pwd

/Users/hqin/github/network_aging_ms_draft




After porting old repo to the new one, I fixed some variable names, clean up unnecessary lines from the codes. "diff' show that old publication file and newly generated publication file are the same (except for one column name). So, the porting repo repeated old results for natural isolate RLS fitting. 

applejack:github hqin$ ls network_aging_ms_draft/0.nat.rls.fitting/sandbox/Bootstrap_summary_for_publication.csv 
network_aging_ms_draft/0.nat.rls.fitting/sandbox/Bootstrap_summary_for_publication.csv
applejack:github hqin$ ls bmc_netwk_aging_manuscript/R1/0.nat.rls.fitting/sandbox/Bootstrap_summary_for_publication.csv 
bmc_netwk_aging_manuscript/R1/0.nat.rls.fitting/sandbox/Bootstrap_summary_for_publication.csv
applejack:github hqin$ diff  bmc_netwk_aging_manuscript/R1/0.nat.rls.fitting/sandbox/Bootstrap_summary_for_publication.csv  network_aging_ms_draft/0.nat.rls.fitting/sandbox/Bootstrap_summary_for_publication.csv 
1c1
< "BootstrapMean...c..my.strains...","RwithStd","t0withStd","nwithStd","GwithStd","avgLSwithStd"
---
> "BootstrapMean...c..strains...","RwithStd","t0withStd","nwithStd","GwithStd","avgLSwithStd"


20180531. trying to find old script for histogram overlay from Jan 13 2018 commit.
https://github.com/hongqin/bmc_netwk_aging_manuscript/commit/91ebd58ba7ad71635dbdbf9e324f883ceb0baf6d
https://github.com/hongqin/bmc_netwk_aging_manuscript/blob/91ebd58ba7ad71635dbdbf9e324f883ceb0baf6d/R1/1.kaeberlein04plos/0.fit.kaeberlein04.pdf

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