This site is to serve as my note-book and to effectively communicate with my students and collaborators. Every now and then, a blog may be of interest to other researchers or teachers. Views in this blog are my own. All rights of research results and findings on this blog are reserved. See also http://youtube.com/c/hongqin
@hongqin
PrivaSeq(link is external): A tool base for quantification and analysis of the individual characterizing information leakage, which can be used to link phenotype datasets to genotype datasets and reveal sensitive information in linking attacks.
PopMedNet(link is external): A scalable and extensible open-source informatics platform designed to facilitate the implementation and operation of distributed health data networks.
PeerSMC(link is external): A web-browser based tool allowing for two or more parties to conduct secure multiparty computation.
The data visualization awards are making a wide range of large biomedical datasets easier to use and interpret, including brain scan imaging, geo-referenced data, health care systems dynamic data, and genomics data.
GGV(link is external): The Geography of Genetic Variants (GGV) browser is a web services software implementation of EEMS. EEMS is a new and innovative method for visualizing and analyzing population genetics data and other such geo-tagged biomedical data.
HSD ontology(link is external): A novel method for identifying and extracting healthcare systems dynamics (HSD) data, and for integrating these data with "traditional" electronic health record (EHR) data. HSD data take into account the dynamics of the healthcare system when interpreting medical records. (For example, the date when a patient developed a disease can be inferred from when they received a diagnosis, scheduled a doctor visit, tests were ordered, etc.)
Caleydo Web(link is external): Caleydo Web is a suite of web based methods and software tools designed to meet current needs for visualization and analysis of complex, heterogeneous biomedical data.
Vials(link is external): Vials is a novel visual analysis tool for analyzing splicing patterns in RNA-seq data
The data wrangling awards are developing new methods and tools to improve the utility of big datasets by making them easier to share, integrate, and transform.
IRRMC(link is external): The Integrated Resource for Reproducibility in Macromolecular Crystallography is a public database of x ray crystallography data, which provides a method for cleaning, collecting, and providing metadata for raw x-ray diffraction datasets.
Fitmunk(link is external): A new program for the automatic building of amino-acid side chains in protein crystal structures.
MODMatcher(link is external): A computational approach to identify and correct sample labeling errors in the multiple types of molecular data that can be used in subsequent integrative analyses.
ActMiR(link is external): A software tool that infers the activity of miRNAs from expression data of target genes.
AutoEEG(link is external) and MERCuRY: New methods to process EEG cohort datasets and clinical records, align epileptic events, and identify seizure onset patterns that are of direct impact to clinicians studying epilepsy.
Mygeneinfo.com(link is external) and myvarientinfo.com: Open source, high-performance, and continuously-updated data application programming interfaces (APIs) for accessing comprehensive, structured gene and variant annotations. The integration of multiple information streams into a community platform for annotating gene and genetic variation data significantly reduces siloing and duplication of effort across multiple databases and their user communities.
AsterixDB(link is external): A data management tool enabling ready access to and use of behavioral and other health-relevant data contained in social media streams developed primarily for HIV risk behavioral research.
geQTL(link is external): A sparse regression method that can detect both group-wise and individual associations between SNPs and expression traits.
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