Saturday, October 13, 2018

genome wide crisp screen in human pancreatic tumor cell line



* Nature medicine, 2017. genome wide SCRIPS screens reveal a Wnt-FZD5 signaling circuit as a druggable vulnerability of RNF43 mutant pancreativ tumaors


https://www.nature.com/articles/nm.4219#supplementary-information
raw reads counts in Excel table
https://www.nature.com/articles/nm.4219#supplementary-information


From the paper, Bayes Factor BF is the confidence of a gene caucses a decrease in fitness. So, high BF indicates decrease in fitness (essential genes), and low BF indicate proliferation.

FZD5 genes shows highest BF factor in 3 pancreatic cancer cell lines, but not in other cells lines. Hence, its essentiality is "context sensitive".


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