pandas append dataframe

https://pandas.pydata.org/pandas-docs/stable/reference/api/pandas.DataFrame.append.html#pandas.DataFrame.append

ipad zoom meeting sharing bug fixed

Zoom cannot share screen on ipad.

Removed and reinstalled Zoom, fixed this problem.

UTC summer housing support
https://www.utc.edu/housing/summerservices/summercampconferencespacerequest.php

porcupoine problem

https://en.wikipedia.org/wiki/List_of_paradoxes

power of good stories

Qin, Fall 2019 course schedule

bibtex, pdflatex

applejack:bmc_netwk_aging_manuscript hqin$ bibtex bmc_networkaging

This is BibTeX, Version 0.99d (TeX Live 2016)

The top-level auxiliary file: bmc_networkaging.aux

The style file: bmc-mathphys.bst

Database file #1: qin_networkaging.bib

pdflatex bmc_networkaging

pdflatex bmc_networkaging

Bibtex from PubMed, TexMed

https://www.bioinformatics.org/texmed/

minIon yeast sequence data . SRA

SRA
https://www.ncbi.nlm.nih.gov/sra/?term=MinION+yeast

https://www.ncbi.nlm.nih.gov/sra/SRX5004466[accn]
https://trace.ncbi.nlm.nih.gov/Traces/sra/?run=SRR8184500

https://www.ncbi.nlm.nih.gov/sra/SRX1285790[accn]

**** cpsc4999 plan

Key topics
Linux
RNAseq
R/Rstudio Rmd

Online:
Regular expression online exercise

RNAseq
biological network


Potential student projects: 
time lapsed image analysis
rDNA reads in yeast genomes ~ lifespan
chemical compounds
network controllability
yeast RLS ~ genomics features
prediction of essential and non-essential genes.
ecology network analysis
aging data comparison
RNN reverse engineering of gene interactions


Reference:
data visualization book
https://serialmentor.com/dataviz/

http://hongqinlab.blogspot.com/2015/06/ngs-tutorials.html
http://www-personal.une.edu.au/~cgondro2/Rcourse.htm
Jackson lab workshop
Data Carpentry,
https://github.com/data-lessons/genomics-workshop
https://data-lessons.github.io/genomics-workshop/ 

EdX genomics course

how to read a scientific paper

https://violentmetaphors.com/2013/08/25/how-to-read-and-understand-a-scientific-paper-2/?fbclid=IwAR0p8P5EAi8Mir_rDyH-TLY6uUsn9ZVa2YvLMgjoEj3H6lxQdYqUvAKTnHU

Spearman footrule distance

Spearman footrule distance, a meaningful way to combine value and ranks

https://people.revoledu.com/kardi/tutorial/Similarity/FootruleDistance.html