Thursday, May 20, 2021

GTEx phenotypes

 

Here is a sample phenotype data that I found from the public site of GTEx. The example file provide attributes of

Sample_id, age, sex, blood test results, postmortem information, sequence entries. 

 

This file is from 

https://storage.googleapis.com/gtex_external_datasets/eyegex_data/annotations/EyeGEx_meta_combined_inferior_retina_summary_deidentified_geo_ids.csv

 

I would expect the unreleased files may contain similar but more disease-related attribute based on GTEx-based publications. 

 

More on phenotypes: 

https://www.ncbi.nlm.nih.gov/projects/gap/cgi-bin/dataset.cgi?study_id=phs000424.v8.p2&phv=169091&phd=3910&pha=&pht=2742&phvf=&phdf=&phaf=&phtf=&dssp=1&consent=&temp=1


The "Phenotype Datasets" describes 189 variables in the table for v8. 


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