The length of the boundary of the nth iterate of the original triangle is the total length of the boundaries of all the shaded small triangles in the nth iterate. It can be shown that this gets arbitrarily large as n gets arbitrarily large. Therefore we conclude that a Sierpinski gasket has infinite perimeter!
[hqin@firefly ~]$ bash /opt/ohpc/pub/singularity/test-scripts/alphafold-2/alphafold-singularity-run.sh
Mounting /scr -> /mnt/data_dir
Mounting /scr/alphafold-data/uniref90 -> /mnt/uniref90_database_path
Mounting /scr/alphafold-data/mgnify -> /mnt/mgnify_database_path
Mounting /scr/alphafold-data/bfd -> /mnt/bfd_database_path
Mounting /scr/alphafold-data/uniclust30/uniclust30_2018_08 -> /mnt/uniclust30_database_path
Mounting /scr/alphafold-data/pdb70 -> /mnt/pdb70_database_path
Mounting /scr/alphafold-data/pdb_mmcif -> /mnt/template_mmcif_dir
Mounting /scr/alphafold-data/pdb_mmcif -> /mnt/obsolete_pdbs_path
--data_dir=/mnt/data_dir/alphafold-data --uniref90_database_path=/mnt/uniref90_database_path/uniref90.fasta --mgnify_database_path=/mnt/mgnify_database_path/mgy_clusters_2018_12.fa --bfd_database_path=/mnt/bfd_database_path/bfd_metaclust_clu_complete_id30_c90_final_seq.sorted_opt --uniclust30_database_path=/mnt/uniclust30_database_path/uniclust30_2018_08 --pdb70_database_path=/mnt/pdb70_database_path/pdb70 --template_mmcif_dir=/mnt/template_mmcif_dir/mmcif_files --obsolete_pdbs_path=/mnt/obsolete_pdbs_path/obsolete.dat --output_dir=/mnt/output --benchmark=0 --logtostderr --fasta_paths=/opt/ohpc/pub/singularity/test-scripts/alphafold-2/T1050.fasta --max_template_date=2021-12-31
/scr:/mnt/data_dir,/scr/alphafold-data/uniref90:/mnt/uniref90_database_path,/scr/alphafold-data/mgnify:/mnt/mgnify_database_path,/scr/alphafold-data/bfd:/mnt/bfd_database_path,/scr/alphafold-data/uniclust30/uniclust30_2018_08:/mnt/uniclust30_database_path,/scr/alphafold-data/pdb70:/mnt/pdb70_database_path,/scr/alphafold-data/pdb_mmcif:/mnt/template_mmcif_dir,/scr/alphafold-data/pdb_mmcif:/mnt/obsolete_pdbs_path,/home/hqin:/mnt/output
Singularity container environment is now available on Firefly. And I prepared an image for running Alphafold and designed a customizable run script for interacting with the instance.
To quickly test Alphafold with default config and input, run the following:
$ bash /opt/ohpc/pub/singularity/test-scripts/alphafold-2/alphafold-singularity-run.sh
Here's a list of locations for relevant directories:
- Alphafold inference data: /scr/alphafold-data
- Singularity image Alphafold: /opt/ohpc/pub/singularity/images/alphafold-2.sif
- Sample run script and fasta file: /opt/ohpc/pub/singularity/test-scripts/alphafold-2
You have missed the fall deadline to submit and complete all requirements. Spring 2023 would be your best bet. Files are not reviewed for an admission decision until all academic requirements have been submitted.
The following requirements must be fulfilled by July 1st for the fall terms and by November 1st for the spring terms.
Please note, we do not begin new students in the summer term due to immigration requirements.
Refer to the programs link below for each department’s requirements.
Submitting official proof of funding can be done after the file has been reviewed for an admission decision but before the deadline.
Generally, International students are not eligible for graduate assistantships during the first semester at UTC. Upon completion of one full-time semester and a GPA cum of 3.25 or higher, you may be considered for graduate assistantship. It is important to note graduate assistantships are highly competitive and based on merit, not monetary need.
IF a GA is available, they are given by the program to which you applied and accepted, not by our office.
Visit www.utc.edu/international for more information regarding housing, orientation, student fees, health insurance and the admissions process.
If you have any questions, please don’t hesitate to email me.
| Nucleotide symbol | Full Name |
| A | Adenine |
| C | Cytosine |
| G | Guanine |
| T | Thymine |
| U | Uracil |
| R | Guanine / Adenine (purine) |
| Y | Cytosine / Thymine (pyrimidine) |
| K | Guanine / Thymine |
| M | Adenine / Cytosine |
| S | Guanine / Cytosine |
| W | Adenine / Thymine |
| B | Guanine / Thymine / Cytosine |
| D | Guanine / Adenine / Thymine |
| H | Adenine / Cytosine / Thymine |
| V | Guanine / Cytosine / Adenine |
| N | Adenine / Guanine / Cytosine / Thymine |
https://lilianweng.github.io/posts/2021-09-25-train-large/
https://lilianweng.github.io/posts/2019-03-14-overfit/
The msa alignment in GISAID in 2022 is only limited to the reference sequence. So, the position is in the alignment should match the reference genome.
GISAID reference wuhan-hu-4
hCoV-19/Wuhan/WIV04/2019|EPI_ISL_402124, full length 29891 nucleotides.
https://github.com/cjcarlson/embarcadero
https://www.unb.ca/cic/datasets/index.html
Canadian Institute for Cybersecurity datasets are used around the world by universities, private industry, and independent researchers. We maintain an interactive map indicating datasets downloaded by country.
The following datasets are currently available:
Healthcare and diminishing returns
https://randomcriticalanalysis.com/2019/11/07/a-tale-of-two-covariates-why-owid-and-company-are-wrong-about-us-healthcare/#rcatoc-notes
Flagship unwraps new AI biotech that looks to predict variants before they’re here
https://endpts.com/flagship-unwraps-new-ai-biotech-that-looks-to-predict-variants-before-theyre-here/
Q1: What are potential sources of bias that may explain NIST’s findings? Should there be
limitations placed on the use of facial recognition technology based on your assessment
of NIST’s study?
Source of images: “All came from operational databases provided by the State Department, the
Department of Homeland Security and the FBI.”
Uneven Training data?
Unequal sampling?
Q2: Facial recognition technology is becoming ubiquitous to access phones, computers, US
taxes, etc. For the application of facial recognition technology in healthcare, what are
some unique considerations that developers/policymakers/scientists should
acknowledge/apply?
Data privacy?
Potential data theft
Q3: To what extent are patients, providers (e.g., clinicians, hospitals, health systems), payers
(e.g., insurers, employers), and policymakers (e.g., healthcare and insurance regulators,
state Medicaid directors) aware of the inclusion of variables based on race/ethnicity in
healthcare algorithms and algorithm-informed decision tools?
Payment issues
https://assets.publishing.service.gov.uk/government/uploads/system/uploads/attachment_data/file/1086494/Technical-Briefing-43-28.06.22.pdf
Using Qin's cumulative N ratio method
BA.2 / BA.1, slope = 0.01464467
