*** bio386, Gordon exercise 20151105Thu

Gordon, file transfer

Procedure to transfer bio386.tar archives from QIN's directory to student directory: 

You can loginto Gordon using ssh or Putty directly

$ ssh username@gordon.sdsc.xsede.org

Then go to your file directory:  

$ cd /oasis/scratch/username/temp_project/

Then copy bio386.tar to your file directory

$  cp /oasis/scratch/hongqin/temp_project/bio386.tar . 

Then 

$ tar xvf bio386.tar 

Then

$ cd Slim-network-aging-bio386-fall-2015

Then 

$ nano -w  20151101-net-sim-ginppi.R

Inside of nano, you should change the username in the following line: 

mydir = '/oasis/scratch/username/temp_project/Slim-network-aging-bio386-fall-2015'

Then control-X save and exit nano

Now, we can need to change the working directory in PBS job script. 

$ nano -w netaging.pbs

Then change username in the following line

 cd /oasis/scratch/hongqin/temp_project/Slim-network-aging-bio386-fall-2015

Then exit and save. 

Then submit the job request

$ qsub netaging.pbs

If this runs, you are one of the first Spelman students to use a Federally funded super-computer. 

To check the status of your computing jobs

$ qstat -u username