Tuesday, June 21, 2016

CCLE, cancer cell cline encyclopedia

Cancer cell line encyclopedia

http://www.broadinstitute.org/ccle/data/browseData?conversationPropagation=begin

After login, there are "published" and "in process" data available for download. These data can also be sent to Genospace (though it did not work for me).

CCLE R codes
http://www.broadinstitute.org/ccle/Rpackage/

From the 2015 nature publications, Elastic nets and Ridge line regressions were used there.

Genomespace:
https://gsui.genomespace.org/jsui/


http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=gse36139

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