Wednesday, June 22, 2016

install CCLE RPackage, version problems, fixed using binary files

install.packages("ggplot2", "scales")

install.packages("gplots", "RColorBrewer", "vioplot", "dplyr", "reshape2", "plyr")

'glmnet' not available for R 3.0.3
Fix this problem by installing the binary tar.gz file r-release: glmnet_2.0-5.tgz from 

install.packages("~/github/JZ_compound/CCLE/RPackage/DRANOVA_1.0.tar.gz", repos = NULL, type = "source")


 install.packages("~/github/JZ_compound/CCLE/RPackage/CCLE.GDSC.compare_1.0.4.tar.gz", repos = NULL, type = "source")

OR

install.packages("~/github/JZ_compound/CCLE/RPackage/CCLE.GDSC.compare_1.0.4.tar.gz", repos = NULL, type = "source", dependencies = TRUE)




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