Wednesday, December 30, 2020

DNA methylation, aging, and tissue and cell types

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7017047/
Understanding the Relevance of DNA Methylation Changes in Immune Differentiation and Disease, Carlos de la Calle-Fabregat, Octavio Morante-Palacios, and Esteban Ballestar*

Immune cells are one of the most complex and diverse systems in the human organism. Such diversity implies an intricate network of different cell types and interactions that are dependently interconnected. The processes by which different cell types differentiate from progenitors, mature, and finally exert their function requires an orchestrated succession of molecular processes that determine cell phenotype and function. The acquisition of these phenotypes is highly dependent on the establishment of unique epigenetic profiles that confer identity and function on the various types of effector cells. These epigenetic mechanisms integrate microenvironmental cues into the genome to establish specific transcriptional programs. Epigenetic modifications bridge environment and genome regulation and play a role in human diseases by their ability to modulate physiological programs through external stimuli. DNA methylation is one of the most ubiquitous, stable, and widely studied epigenetic modifications. Recent technological advances have facilitated the generation of a vast amount of genome-wide DNA methylation data, providing profound insights into the roles of DNA methylation in health and disease.


What does "stable" methylation means? 
DNA methylation, particularly cytosine methylation, is the best-studied epigenetic modification
It consists of the addition of a methyl group to the carbon 5 (5meC) of cytosine-followed-by-guanine dinucleotides (CG or CpG sites). It is characterized by its stability and heritability

CpG are often found in vertebrate promoters.
DNA methylation regulation is essential for differentiation of human stem cells. 
CpG islands is pivotal in long-term gene silencing, x-chromosome inactivation, genomic imprinting and pre-mRNA alternative splicing. 


important reviews:
Goldberg, A.D.; Allis, C.D.; Bernstein, E. Epigenetics: A Landscape Takes Shape. Cell 2007, 128, 635–638.
Jones, P.A. Functions of DNA methylation: Islands, start sites, gene bodies and beyond. Nat. Rev. Genet.
2012, 13, 484–492. 





 



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