http://uswest.ensembl.org/info/genome/variation/index.html
http://uswest.ensembl.org/info/docs/api/variation/variation_tutorial.html
http://uswest.ensembl.org/info/docs/api/variation/variation_tutorial.html#alleles
http://uswest.ensembl.org/info/website/tutorials/Ensembl_variation_quick_reference_card.pdf
library(biomaRt)
snp.db <- useMart("snp", dataset="hsapiens_snp")
nt.biomart <- getBM(c("refsnp_id","allele","chr_name","chrom_start",
"chrom_strand","associated_gene",
"ensembl_gene_stable_id"),
filters="refsnp",
values=the.snps,
mart=snp.db)
Reference:
http://www.biostars.org/p/1332/
Ensemble ported some dbSNP population infor about SNP
Example: rs1800944 gene CCR5
http://uswest.ensembl.org/Homo_sapiens/Phenotype/Locations?ph=763
I tried hemoglobin but did not see snps.
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