byte:blast.fasta.demo hqin$ cat commands.txt
blastp -subject db.faa -query query.faa
makeblastdb -in db2.faa
blastp -query my.seq.faa -db db2.faa | less
blastp -query my.seq.faa -db db2.faa -outfmt 6
blastp -query my.seq.faa -db db2.faa -outfmt 7 | less
#old version, still work on osX
blastall -p blastp -d db.faa -i query.faa -F F | less
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