Wednesday, January 16, 2013

Gblocks command line usage for codon alignments

# For codon alignment
 Gblocks _tmp.aln -t=c -e=.gb

The filename does not have a switch.
-t for data type, 'c' for codon
-e for file extension, and '.gb' is probably for GBlocks.

Reference:
http://molevol.cmima.csic.es/castresana/Gblocks/Gblocks_documentation.html#command_line




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