Packages installation in R on ridgeside

Under shell, run R

Inside of R:
 source("https://bioconductor.org/biocLite.R")
 biocLite('ballgown')


#Please also run the following code to install all packages in R. This may take 10-12 hours.
install.packages(new.packages())

#A prompt will ask for a mirror site. Any site from USA should work.