Tuesday, November 29, 2016

lab meeting

1a) DE gene lists for RNAseq project
TODO: there are various time points between control and treatment. Should we use the consensus DEG list?

It seems that "GeneID" in BGI report are from NCBI. Example of 57573 is


So, "Gene ID" is a standard NCBI number.

1b) Pathway analysis plan for DE gene lists
TODO: There are different sources of human gene/protein networks. We should try several for comparisons.
TODO: We should try different clustering method, such as hlcust, mcl, etc (refer to Qin's previous paper for clustering analysis).

2) time-lapsed image analysis for yeast replicative lifespan
   We can use ImageJ, MATlab or R.

No comments:

Post a Comment