Thursday, August 27, 2015

greenfield job run (successful)

[hqin2@greenfield ~]$ cat foo.pbs 
#!/bin/bash
#PBS -l nodes=1:ppn=15
#PBS -l walltime=5:00
#PBS -o test1.out
#PBS -j oe
set echo
echo hostname
module load R/3.2.1-mkl
R --vanilla --slave CMD BATCH ./myR.R



[hqin2@greenfield ms02GINPPI]$ cat ms02.pbs
#!/bin/bash
# Request 15 cores
#PBS -l nodes=1:ppn=15
#  Request 30 minutes of cpu time
#PBS -l walltime=30:00

module load R/3.2.1-mkl

echo hostname

pwd
cd /crucible/mc48o9p/hqin2/mactower-network-failure-simulation-master/ms02GINPPI
pwd


R --vanilla --slave -f ms02-2015June24.R --args 1000 1001




I also updated the path in ms02-2015Aug27.R
Some input files were removed during the transfer and I put them back.












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