Tuesday, July 1, 2014

Gene expression and SCMD

'scott20140701.R'

list.files(, path="data", pattern='GSE') 
#GSE1221 CV !~ RLS
#GSE18334_log2CV.csv CV~ RLS p=0.45
#GSE33276_log2CV.csv, p=0.9
# GSE3821_log2CV.csv, p=0.97
#GSE9840_log2CV.csv, p=0.052

summary( lm( RLS.tb2$myCV ~ sqrt(RLS.tb2$scmdCV )) )#p 0.78
summary( lm( RLS.tb2$myCV ~ sqrt(RLS.tb2$scmdMean )) )#p 0.03 ?!
summary( lm( RLS.tb2$myCV ~ sqrt(RLS.tb2$scmdStddev )) )#p 0.02 ?!


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