Wednesday, January 6, 2016

(in progress) PBS run 1.ori.ginppi.2015Oct



/home/hongqin/temp_project/mactower-network-failure-simulation/1.ori.ginppi.2015Oct

[hongqin@gordon-ln3 1.ori.ginppi.2015Oct]$ cat ori_aging_loopgordon.pbs 
#!/bin/bash
#PBS -l nodes=1:ppn=16
#PBS -l walltime=07:00:00:00

module load R

echo hostname
cd /oasis/scratch/hongqin/temp_project/mactower-network-failure-simulation/1.ori.ginppi.2015Oct
pwd

for p in 1.0 0.99 0.98 0.97 0.96 0.95 0.94 0.93 0.92 0.91 0.9 0.89 0.88 0.87 0.86 0.85 0.82 0.8 
do
   #for LOne in 0.002 0.0021 0.0022 0.0023 0.0024 0.0025 0.0026 0.0028 0.0028 0.0029 0.003 0.0035 0.004 0.0045
   for LOne in 0.001 0.0011 0.0012 0.0013 0.0014 0.0015 00016 0.0017 0.0018 0.0019 0.002
   do
      echo "$p $LOne"
 Rscript netwk_aging_sim.v0.1b.R -if1 merged_PPIGIN_Factorized2015Oct132Cols.csv -if2 essentialGeneLookupTable_20151013.csv -l1 $LOne -l2 0 -dt 4 -p $p -n 5000 -op ginppi -od ginppi.ori.out -iC 16 -d 1 -h /oasis/scratch/hongqin/temp_project/mactower-network-failure-simulation/1.ori.ginppi.2015Oct
   done

done

[hongqin@gordon-ln3 1.ori.ginppi.2015Oct]$ qstat -u hongqin
gordon-fe2.local: 
                                                                                  Req'd    Req'd       Elap
Job ID                  Username    Queue    Jobname          SessID  NDS   TSK   Memory   Time    S   Time
----------------------- ----------- -------- ---------------- ------ ----- ------ ------ --------- - ---------
2394355.gordon-fe2.loc  hongqin     normal   ori_aging_loopgo 113139     1     16    --  168:00:00 R  00:10:54
Job started at 10:30am --> 


[hongqin@gordon-ln3 1.ori.ginppi.2015Oct]$ cat ori_aging_loopgordon.2.pbs 
#!/bin/bash
#PBS -l nodes=1:ppn=16
#PBS -l walltime=07:00:00:00

module load R

echo hostname
cd /oasis/scratch/hongqin/temp_project/mactower-network-failure-simulation/1.ori.ginppi.2015Oct
pwd

for p in 1.0 0.99 0.98 0.97 0.96 0.95 0.94 0.93 0.92 0.91 0.9 0.89 0.88 0.87 0.86 0.85 0.82 0.8 
do
   for LOne in 0.001 0.0011 0.0012 0.0013 0.0014 0.0015 00016 0.0017 0.0018 0.0019 0.002 0.0021 0.0022 0.0023 0.0024 0.0025 0.0026 0.0028 0.0028 0.0029 0.003 0.0035 0.004 0.0045
   do
      echo "$p $LOne"
 Rscript netwk_aging_sim.v0.1b.R -if1 merged_PPIGIN_Factorized2015Oct132Cols.csv -if2 essentialGeneLookupTable_20151013.csv -l1 $LOne -l2 0 -dt 5 -p $p -n 2500 -op ginppi -od ginppi.ori.out -iC 16 -d 1 -h /oasis/scratch/hongqin/temp_project/mactower-network-failure-simulation/1.ori.ginppi.2015Oct
   done

done

[hongqin@gordon-ln3 1.ori.ginppi.2015Oct]$ qstat -u hongqin
gordon-fe2.local: 
                                                                                  Req'd    Req'd       Elap
Job ID                  Username    Queue    Jobname          SessID  NDS   TSK   Memory   Time    S   Time
----------------------- ----------- -------- ---------------- ------ ----- ------ ------ --------- - ---------
2394355.gordon-fe2.loc  hongqin     normal   ori_aging_loopgo 113139     1     16    --  168:00:00 R  00:19:15
2394382.gordon-fe2.loc  hongqin     normal   ori_aging_loopgo 103945     1     16    --  168:00:00 R  00:01:09

No comments:

Post a Comment